Baird Amy B, Braun Janet K, Engstrom Mark D, Lim Burton K, Mares Michael A, Ruedas Luis A, Patton John C, Bickham John W
Department of Natural Sciences, University of Houston - Downtown, Houston, Texas, United States of America.
Sam Noble Oklahoma Museum of Natural History, University of Oklahoma, Norman, Oklahoma, United States of America.
PLoS One. 2025 Jun 25;20(6):e0325554. doi: 10.1371/journal.pone.0325554. eCollection 2025.
Species concepts are well established and apply across diverse groups of organisms; however, there is no consensus on what defines higher taxonomic groups. The genus rank is important to taxonomists because it comprises part of the scientific name of an organism. A consistent and biologically meaningful method for determining generic status is needed for taxonomic stability and utility. Lasiurine bats are a group for which there is disagreement on how many genera to recognize. Some authors argue for splitting this group into three genera based on morphology, genetic divergence, and time of divergence; others argue that a single genus should be maintained. Here, we use lasiurines to explore generic-level taxonomy and how it is applied. Genetic divergence levels are compared among sister genera and within genera of vespertilionine bats using Cytochrome b (Cytb) sequences. We used Cytb because it is the most sequenced mitochondrial gene in mammals, but other genes might be more appropriate for a different taxon. Future methods will eventually use complete mitogenomes and genomes. We conclude that lasiurine bats are most appropriately divided into three genera to maintain taxonomic consistency within their subfamily. Since Linnaeus, the quarter millennium of progress in the science of mammalogy has provided a binomial nomenclatural basis from which can be extracted an acceptable range of genetic diversity upon which to establish generic level taxonomy. We offer a biologically meaningful operational definition of the genus, which we call the 2 Sigma Genus Concept, based on genetic divergence between a genus and its sister genus or lineage and compared to the divergence between sister pairs of established genera in the same higher taxonomic category. Our method is phylogenetic; sister genera are based on the best phylogeny for the higher taxonomic category. Genera must be monophyletic and differ from their closest relatives by not more than two standard deviations above or below the mean value of genetic distance for the larger taxonomic group in which they are contained. There should be genetic-based characters (e.g., morphology, protein structure, behavior) that are diagnostic for each genus. Our method is novel in that it uses the statistical distribution of sister divergences within a higher category to guide the allocation of generic status to monophyletic lineages. Within Vespertilioninae, the mean genetic distance between sister genera is 20.68% ± 3.89% (K2P) for the Cytb gene. Therefore, a proposed new genus should have >12.90% genetic distance to its sister genus. Genera that are > 2 standard deviations above the mean (>28.46%) are candidates to be recognized as a higher category such as tribe or subfamily. The sister-genus divergence for the monophyletic lineage that includes all lasiurine bats is 31.14% ± 1.64% which qualifies it as a higher category (i.e., tribe), and the sister-genus divergences of the three monophyletic lineages within Lasiurini (i.e., red, yellow and hoary bats) are 21.77% and 22.91% which qualifies them for genera. We show the applicability of the method beyond Vespertilioninae by providing a case study where we apply it in a distantly related subfamily of bats.
物种概念已得到充分确立,并适用于各种不同的生物群体;然而,对于如何定义更高的分类群却没有达成共识。属级分类对于分类学家来说很重要,因为它是生物体学名的一部分。为了实现分类的稳定性和实用性,需要一种一致且具有生物学意义的方法来确定属的地位。棕蝠属蝙蝠是一个在应该承认多少个属这一问题上存在分歧的群体。一些作者主张根据形态、遗传差异和分化时间将这个群体分为三个属;另一些人则认为应该保留一个属。在这里,我们利用棕蝠属蝙蝠来探讨属级分类以及它是如何应用的。我们使用细胞色素b(Cytb)序列比较了伏翼蝠科姐妹属之间以及属内的遗传差异水平。我们使用Cytb是因为它是哺乳动物中测序最多的线粒体基因,但其他基因可能更适合不同的分类单元。未来的方法最终将使用完整的线粒体基因组和基因组。我们得出结论,为了在其亚科内保持分类的一致性,棕蝠属蝙蝠最适合分为三个属。自林奈时代以来,哺乳动物学这一科学领域四分之三个世纪的进展提供了一个双名法命名基础,从中可以提取出可接受的遗传多样性范围,以此来建立属级分类。我们基于一个属与其姐妹属或谱系之间的遗传差异,并与同一更高分类类别中已确立属的姐妹对之间的差异进行比较,提供了一个具有生物学意义的属的操作定义,我们称之为2西格玛属概念。我们的方法是系统发育的;姐妹属基于更高分类类别的最佳系统发育关系。属必须是单系的,并且与其最亲近的亲属的差异不超过其所在更大分类群体遗传距离平均值上下两个标准差。每个属应该有基于遗传的特征(例如形态、蛋白质结构、行为)可供鉴别。我们的方法新颖之处在于它利用更高分类类别中姐妹分化的统计分布来指导将属的地位分配给单系谱系。在伏翼蝠亚科中,Cytb基因的姐妹属之间的平均遗传距离为20.68%±3.89%(K2P)。因此,一个提议的新属与其姐妹属的遗传距离应该>12.90%。高于平均值两个标准差以上(>28.46%)的属有资格被认定为更高的分类类别,如族或亚科。包括所有棕蝠属蝙蝠的单系谱系的姐妹属分化为31.14%±1.64%,这使其有资格成为更高的分类类别(即族),而棕蝠族内三个单系谱系(即红蝠、黄蝠和灰蝠)的姐妹属分化分别为21.77%和22.91%,这使其有资格成为属。我们通过提供一个案例研究展示了该方法在伏翼蝠亚科之外的适用性,在这个案例中我们将其应用于一个亲缘关系较远的蝙蝠亚科。