Saidjalolov Saidbakhrom, Wu Yibo, Renno Giacomo, Rose Nicholas, Gajić Jelena, Pologne Bertrand, Winssinger Nicolas, Mercier Vincent, Moreau Dimitri, Sakai Naomi, Matile Stefan
Department of Organic Chemistry, University of Geneva, 1211 Geneva, Switzerland.
National Centre of Competence in Research (NCCR) Molecular Systems Engineering, BPR 1095, 4002 Basel, Switzerland.
JACS Au. 2025 Jul 1;5(7):3288-3298. doi: 10.1021/jacsau.5c00432. eCollection 2025 Jul 28.
Although facilitated cellular entry of substrates with thiol-reactive motifs has been observed for decades, this so-called thiol-mediated uptake (TMU) remains poorly understood. We have proposed a mechanism of entry involving cellular proteins that form reversible dynamic covalent bonds with thiol-reactive cascade exchangers (CAXs), which is challenging to prove because the substrate-protein bond is transient and constantly shifting. Thus, with conventional proteomics analysis of TMU, continuing exchange during processing should result in labeling of the inert binders rather than the best exchangers, that is, repressors and intracellular targets, instead of the enablers of TMU. Any static covalent bonding to a binding site will also perturb the molecular relay network of interest. The emerging photocatalytic microenvironment mapping (μMap) proteomics, however, promises to catch snapshots of off-equilibrium relay networks without disturbing their flow. Exchange partners that are temporarily within <4 nm radius of photocatalyst-CAX conjugates should be irreversibly biotinylated without systematically interfering with TMU. μMap proteomics of this elusive flow of TMU was explored for three different photocatalyst-CAX conjugates. They were measured against CAX-free photocatalyst controls and dynamic covalent TMU inhibitors. Validated by genetic knockdown, solute carriers (MFSD5, SLC29A2), flippases (ATP11C), and tetraspanins (TSPAN8) are identified as primary exchange partners. This is rewarding because their canonical functions already involve local membrane reorganization. The result is a new understanding of the nature of TMU, which will be helpful to guide future progress toward control over cell penetration for drug delivery and drug discovery. It also highlights the unique potential of photocatalytic proximity labeling proteomics to elucidate off-equilibrium molecular relay networks without disturbing their flow.
尽管数十年来人们一直观察到具有硫醇反应性基序的底物能够通过促进作用进入细胞,但这种所谓的硫醇介导摄取(TMU)仍未得到充分理解。我们提出了一种进入机制,该机制涉及细胞蛋白与硫醇反应性级联交换剂(CAXs)形成可逆的动态共价键,这一机制难以证明,因为底物 - 蛋白键是短暂且不断变化的。因此,在TMU的传统蛋白质组学分析中,处理过程中的持续交换应导致惰性结合剂而非最佳交换剂(即抑制剂和细胞内靶点,而非TMU的促成因素)被标记。任何与结合位点的静态共价键合也会扰乱感兴趣的分子中继网络。然而,新兴的光催化微环境映射(μMap)蛋白质组学有望捕捉非平衡中继网络的快照而不干扰其流动。暂时处于光催化剂 - CAX共轭物半径<4 nm范围内的交换伙伴应被不可逆地生物素化,而不会系统性地干扰TMU。针对三种不同光催化剂 - CAX共轭物探索了这种难以捉摸的TMU流动的μMap蛋白质组学。将它们与无CAX的光催化剂对照和动态共价TMU抑制剂进行测量。经基因敲低验证,溶质载体(MFSD5、SLC29A2)、翻转酶(ATP11C)和四跨膜蛋白(TSPAN8)被确定为主要交换伙伴。这很有意义,因为它们的典型功能已经涉及局部膜重组。结果是对TMU的性质有了新的理解,这将有助于指导未来在控制细胞穿透以进行药物递送和药物发现方面取得进展。它还突出了光催化邻近标记蛋白质组学在阐明非平衡分子中继网络而不干扰其流动方面的独特潜力。
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