Cattaneo Andrea, Finore Ilaria, Sanfilippo Claudia, Papikyan Razmik, Leone Luigi, Patti Angela, Di Donato Paola, Poli Annarita
National Research Council of Italy (CNR), Institute of Biomolecular Chemistry (ICB), via Campi Flegrei 34, Pozzuoli, 80078 Napoli (NA), Italy; Ca' Foscari University of Venice, Department of Environmental Sciences, Informatics and Statistics (DAIS), via Torino 155, 30172 Mestre (VE), Italy.
National Research Council of Italy (CNR), Institute of Biomolecular Chemistry (ICB), via Campi Flegrei 34, Pozzuoli, 80078 Napoli (NA), Italy.
Bioresour Technol. 2025 Nov;436:133052. doi: 10.1016/j.biortech.2025.133052. Epub 2025 Aug 5.
BACKGROUND: Antarctica can serve as the source of novel extremophilic microorganisms and biomolecules, including extremozymes which could find applications in bioremediation processes for the presence of enzymes able to degrade plastic polymers. Carboxylic ester hydrolases (EC 3.1.1) catalyze the hydrolysis of linear and cyclic ester bonds. Among these, esterases (EC 3.1.1.1) and triacylglycerol lipases (EC 3.1.1.3) have been shown effective in degrading polyester polymers. INVESTIGATION AND METHODOLOGIES: Two psychrophilic bacterial strains ASPA161_6 and ASPA161_9 were isolated from environmental samples, and their optimal growth conditions were determined. The marine sediment samples were collected at a depth of 20 m in the Antarctic Specially Protected Area n. 161 (74°42' S, 164°07' E, Ross Sea) during the 2017/2018 XXXIII Italian Antarctic expedition. Genomes were sequenced, assembled and annotated. Genes encoding for proteins involved in cold adaptation were searched with an in-silico search approach. Moreover, the sequences of genes involved in the degradation of polyester plastics were studied through the annotation via PlaticDB tool. Esterase and lipase activities were also detected in-plate and quantitatively evaluated at different temperatures on crude protein extracts from the extracellular fraction of the microorganisms using a specific assay based on the hydrolysis of p-nitrophenyl esters. Furthermore, the same fractions were tested onto the polymer polyethylene adipate as a model of biodegradable polyester plastic. The degradation studies with polyethylene adipate were performed following the reaction progress with H NMR. RESULTS AND DISCUSSION: Based on digital DNA-DNA hybridization and average nucleotide identity values, the two new isolates were assigned to the Psychrobacter genus. A comprehensive annotation using PlasticDB revealed substantial degree of similarity in the gene sequences coding for a variety of plastic-degrading enzymes, particularly carboxylic ester hydrolases. However, some differences were observed in the enzymatic profiles of the two bacterial strains, highlighting their versatility and potential for effective biodegradation of a range of plastic polymers. Subsequently, carboxylic ester hydrolases were detected with qualitative in-plate assays with olive oil and tributyrin as substrates. The enzymatic activity of psychrotolerant extracellular esterases and lipases was quantified using chromogenic-spectrophotometric assays. The presence of esterases was assayed against pNP-acetate, and for both strains an optimal activity was detected at 35 °C (0.5 and 0.8 nmol pNP released/mg protein in 30 min for strain ASPA161_6 and strain ASPA161_9, respectively). A significant activity was maintained at lower temperatures, ranging from 50.1 and 71.8 % at 15 and 25 °C for strain ASPA161_6 and from 49.6 and 68.1 % for strain ASPA161_9. These results suggested psychrotolerant characteristics of these enzymes. The presence of lipases was determined with pNP-dodecanoate, resulting in 2.6 and 3.5 nmol pNP released/mg protein at 25 °C in 30 min for the two strains. Most of the activity was retained at 25 °C (73.4 and 66.3 %, respectively), with a decrease at 15 °C (45.3 and 38.6 %), which may be attributed to the reduced kinetic activity. Finally, the degradation experiments with PEA with averaged molar mass 1000 g/mol as a model polyester plastic demonstrated a 55-65 % degradation rate after 12 days of incubation. CONCLUSIONS: The obtained data underlined the ability of the investigated strains to express carboxylic ester hydrolases under the specified growth conditions. These findings highlight their biotechnological potential in bioremediation, particularly for sustainable plastic waste management in cold or temperate environments. Future investigations could focus on optimizing enzymatic activity through heterologous expression or utilizing whole-cell systems for direct polymer degradation.
背景:南极洲可作为新型嗜极微生物和生物分子的来源,包括极端酶,由于其存在能够降解塑料聚合物的酶,这些极端酶可用于生物修复过程。羧酸酯水解酶(EC 3.1.1)催化线性和环状酯键的水解。其中,酯酶(EC 3.1.1.1)和三酰基甘油脂肪酶(EC 3.1.1.3)已被证明在降解聚酯聚合物方面有效。 调查与方法:从环境样品中分离出两株嗜冷细菌菌株ASPA161_6和ASPA161_9,并确定了它们的最佳生长条件。在2017/2018年第XXXIII次意大利南极考察期间,在南极特别保护区161号(南纬74°42′,东经164°07′,罗斯海)20米深处采集了海洋沉积物样本。对基因组进行了测序、组装和注释。采用计算机搜索方法搜索编码参与冷适应的蛋白质的基因。此外,通过PlaticDB工具注释研究了参与聚酯塑料降解的基因序列。还在平板中检测了酯酶和脂肪酶活性,并使用基于对硝基苯酯水解的特定测定法在不同温度下对来自微生物细胞外部分的粗蛋白提取物进行了定量评估。此外,将相同的部分测试到作为可生物降解聚酯塑料模型的聚己二酸乙二酯聚合物上。使用1H NMR跟踪反应进程,对聚己二酸乙二酯进行了降解研究。 结果与讨论:基于数字DNA-DNA杂交和平均核苷酸同一性值,将这两个新分离株归入嗜冷杆菌属。使用PlasticDB进行的全面注释显示,编码各种塑料降解酶,特别是羧酸酯水解酶的基因序列具有很大程度的相似性。然而,在这两种细菌菌株的酶谱中观察到了一些差异,突出了它们的多功能性以及对一系列塑料聚合物进行有效生物降解的潜力。随后,以橄榄油和三丁酸甘油酯为底物,通过平板定性测定法检测了羧酸酯水解酶。使用显色分光光度法对耐冷细胞外酯酶和脂肪酶的酶活性进行了定量。针对对硝基苯乙酸酯检测酯酶的存在,对于这两种菌株,在35°C时均检测到最佳活性(ASPA161_6菌株和ASPA161_9菌株在30分钟内分别释放0.5和0.8 nmol对硝基苯酚/毫克蛋白质)。在较低温度下保持了显著活性,ASPA161_6菌株在15°C和25°C时分别为50.1%和71.8%,ASPA16L_9菌株为49.6%和68.1%。这些结果表明这些酶具有耐冷特性。用对硝基苯十二烷酸酯测定脂肪酶的存在,在25°C下30分钟内,这两种菌株分别释放2.6和3.5 nmol对硝基苯酚/毫克蛋白质。大部分活性在25°C时保留(分别为73.4%和66.3%),在15°C时降低(分别为45.3%和38.6%),这可能归因于动力学活性降低。最后,以平均摩尔质量为1000 g/mol的聚己二酸乙二酯作为模型聚酯塑料进行的降解实验表明,孵育12天后降解率为55 - 65%。 结论:所获得的数据强调了所研究菌株在特定生长条件下表达羧酸酯水解酶的能力。这些发现突出了它们在生物修复中的生物技术潜力,特别是在寒冷或温带环境中可持续塑料废物管理方面。未来的研究可以集中在通过异源表达优化酶活性或利用全细胞系统直接降解聚合物。
Psychopharmacol Bull. 2024-7-8
Cochrane Database Syst Rev. 2021-4-19