Biedenbänder Thomas, Rodgers Aryana, Schröder Mirjam, Vugmeyster Liliya, Corzilius Björn
Institute of Chemistry, Albert-Einstein-Str. 27, University of Rostock, 18059 Rostock, Germany.
Department Life, Light & Matter, Albert-Einstein-Str. 25, University of Rostock, 18059 Rostock, Germany.
J Magn Reson Open. 2024 Dec;21. doi: 10.1016/j.jmro.2024.100161. Epub 2024 Sep 18.
Molecular dynamics of functional groups contain valuable information about structural properties and functional activities in biomolecules. NMR spectroscopy is a sensitive tool for the investigation of molecular dynamics over a wide range of timescales and thus may deepen the understanding of the biomolecules of interest. Here, we present an approach to use DNP-enhanced H NMR to study dynamics of selectively deuterated methyl groups in insoluble proteins such as amyloid beta (Aβ) fibrils. We adopted and optimized the matrix-free DNP approach by varying the amount of added polarizing agent as well as the rehydration level of model proteins. We show that the DNP enhancement obtained in H-H cross-polarization (CP) MAS spectra may increase the sensitivity for selectively deuterated Aβ fibril samples by more than one order of magnitude, accelerating the collection of spin-lattice relaxation data in the DNP-accessible temperature range between 100 and 150 K by up to 400-fold. However, below the coalescence temperature, which describes the transition from the fast to the slow exchange regime, the experimentally obtained relaxation time constants suffer from a paramagnetic relaxation enhancement effect due to the presence of the polarizing agent. This seems to be a general effect for biomolecules as it is also confirmed for two other protein model systems. Our demonstration opens the possibility to extend the scope of H NMR for dynamics measurements to effective concentrations and/or temperatures below what is currently accessible; however, the observed interplay between paramagnetic relaxation and molecular dynamics also emphasizes the necessity for a better understanding of relaxation effects in DNP-enhanced NMR.
官能团的分子动力学包含有关生物分子结构特性和功能活性的宝贵信息。核磁共振光谱是一种在广泛时间尺度上研究分子动力学的灵敏工具,因此可以加深对感兴趣生物分子的理解。在此,我们提出一种使用动态核极化增强的氢核磁共振(DNP-enhanced H NMR)来研究不溶性蛋白质(如淀粉样β蛋白(Aβ)纤维)中选择性氘代甲基动力学的方法。我们通过改变添加的极化剂的量以及模型蛋白质的再水化水平,采用并优化了无基质DNP方法。我们表明,在氢-氢交叉极化(CP)MAS光谱中获得的DNP增强可以将选择性氘代Aβ纤维样品的灵敏度提高一个以上数量级,在100至150 K的DNP可及温度范围内,将自旋晶格弛豫数据的收集速度加快多达400倍。然而,在描述从快速交换到慢速交换转变的合并温度以下,由于极化剂的存在,实验获得的弛豫时间常数受到顺磁弛豫增强效应的影响。这似乎是生物分子的普遍效应,因为在其他两个蛋白质模型系统中也得到了证实。我们的论证为将氢核磁共振用于动力学测量的范围扩展到低于目前可及的有效浓度和/或温度开辟了可能性;然而,观察到的顺磁弛豫与分子动力学之间的相互作用也强调了更好地理解DNP增强核磁共振中弛豫效应的必要性。