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通过计算和实验方法探索人免疫球蛋白G中糖型依赖性动态调节。

Exploring glycoform-dependent dynamic modulations in human immunoglobulin G via computational and experimental approaches.

作者信息

Yanaka Saeko, Sakae Yoshitake, Miyanoiri Yohei, Yamaguchi Takumi, Isono Yukiko, Kondo Sachiko, Iwasaki Miyuki, Onitsuka Masayoshi, Yagi Hirokazu, Kato Koichi

机构信息

Exploratory Research Center on Life and Living Systems, National Institutes of Natural Sciences, Okazaki 444-8787, Aichi, Japan.

Core for Spin Life Sciences, Okazaki Collaborative Platform, National Institutes of Natural Sciences, Myodaiji 444-8787, Okazaki, Japan.

出版信息

Proc Natl Acad Sci U S A. 2025 Aug 12;122(32):e2505473122. doi: 10.1073/pnas.2505473122. Epub 2025 Aug 5.


DOI:10.1073/pnas.2505473122
PMID:40763016
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12358871/
Abstract

We investigate the impact of glycoform alterations on the dynamic structure of the human immunoglobulin G1 (IgG1) Fc region using integrated computational and experimental approaches. Four distinct IgG1-Fc glycoforms, varying in core fucosylation and nonreducing terminal galactosylation, were generated through a combination of cell engineering and in vitro enzymatic reactions. Stable-isotope-assisted NMR spectroscopy, incorporating both glycan and protein signals, revealed that galactosylation induces chemical shift perturbations extending from the glycan-protein interface to the C2-C3 domain boundary. Molecular dynamics simulations demonstrated that the absence of galactose enhances the mobility of both the glycan and the C2 domain, broadening the conformational landscape of the Fc quaternary structure. This increased flexibility likely contributes to a greater entropic penalty upon binding to effector molecules, which constrain the Fc in an asymmetric conformation. Conversely, the effects of fucosylation are more localized, primarily influencing the dynamics of residues involved in Fcγ receptor IIIa binding. These findings provide atomic-level insights into the distinct yet synergistic mechanisms by which galactosylation and fucosylation modulate IgG1-Fc dynamics and effector functions, offering crucial information for the optimization of therapeutic antibodies.

摘要

我们采用综合计算和实验方法,研究了糖型改变对人免疫球蛋白G1(IgG1)Fc区域动态结构的影响。通过细胞工程和体外酶促反应相结合的方式,产生了四种不同的IgG1-Fc糖型,它们在核心岩藻糖基化和非还原末端半乳糖基化方面存在差异。结合聚糖和蛋白质信号的稳定同位素辅助核磁共振光谱显示,半乳糖基化会引起从聚糖-蛋白质界面延伸至C2-C3结构域边界的化学位移扰动。分子动力学模拟表明,缺乏半乳糖会增强聚糖和C2结构域的流动性,拓宽Fc四级结构的构象格局。这种增加的灵活性可能导致与效应分子结合时产生更大的熵罚,效应分子会将Fc限制在不对称构象中。相反,岩藻糖基化的影响更为局部,主要影响参与Fcγ受体IIIa结合的残基的动力学。这些发现为半乳糖基化和岩藻糖基化调节IgG1-Fc动力学和效应功能的独特但协同的机制提供了原子水平的见解,为治疗性抗体的优化提供了关键信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f217/12358871/665e867397f5/pnas.2505473122fig07.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f217/12358871/34a9e6df10e2/pnas.2505473122fig01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f217/12358871/923b29220957/pnas.2505473122fig02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f217/12358871/b45512b0b8e1/pnas.2505473122fig03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f217/12358871/b72a42e0b471/pnas.2505473122fig04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f217/12358871/9e13f0df25b0/pnas.2505473122fig05.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f217/12358871/440d5149a3f5/pnas.2505473122fig06.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f217/12358871/665e867397f5/pnas.2505473122fig07.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f217/12358871/34a9e6df10e2/pnas.2505473122fig01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f217/12358871/923b29220957/pnas.2505473122fig02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f217/12358871/b45512b0b8e1/pnas.2505473122fig03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f217/12358871/b72a42e0b471/pnas.2505473122fig04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f217/12358871/9e13f0df25b0/pnas.2505473122fig05.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f217/12358871/440d5149a3f5/pnas.2505473122fig06.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f217/12358871/665e867397f5/pnas.2505473122fig07.jpg

相似文献

[1]
Exploring glycoform-dependent dynamic modulations in human immunoglobulin G via computational and experimental approaches.

Proc Natl Acad Sci U S A. 2025-8-12

[2]
Conformational effects of N-glycan core fucosylation of immunoglobulin G Fc region on its interaction with Fcγ receptor IIIa.

Sci Rep. 2017-10-23

[3]
A Novel, Site-Specific N-Linked Glycosylation Model Provides Mechanistic Insights Into the Process-Condition Dependent Distinct Fab and Fc Glycosylation of an IgG1 Monoclonal Antibody Produced by CHO VRC01 Cells.

Biotechnol Bioeng. 2025-4

[4]
Cell-based glycoengineering for production of homogeneous and specific glycoform-enriched antibodies with improved effector functions.

Proc Natl Acad Sci U S A. 2025-2-25

[5]
Glycan engineering reveals interrelated effects of terminal galactose and core fucose on antibody-dependent cell-mediated cytotoxicity.

Biotechnol Prog. 2020-11

[6]
Mouse milk immunoglobulin G Fc-linked N-glycosylation nano-LC-MS analysis in a model of vancomycin exposure during pregnancy.

Anal Bioanal Chem. 2023-5

[7]
An atomistic perspective on antibody-dependent cellular cytotoxicity quenching by core-fucosylation of IgG1 Fc N-glycans from enhanced sampling molecular dynamics.

Glycobiology. 2020-5-19

[8]
Glycoform-dependent conformational alteration of the Fc region of human immunoglobulin G1 as revealed by NMR spectroscopy.

Biochim Biophys Acta. 2006-4

[9]
Antibody Fucosylation Lowers the FcγRIIIa/CD16a Affinity by Limiting the Conformations Sampled by the N162-Glycan.

ACS Chem Biol. 2018-7-27

[10]
Fc-galactosylation modulates antibody-dependent cellular cytotoxicity of therapeutic antibodies.

Mol Immunol. 2016-5

本文引用的文献

[1]
NMR investigations of glycan conformation, dynamics, and interactions.

Prog Nucl Magn Reson Spectrosc. 2024

[2]
Antibodies to watch in 2024.

MAbs. 2024

[3]
Specific location of galactosylation in an afucosylated antiviral monoclonal antibody affects its FcγRIIIA binding affinity.

Front Immunol. 2022

[4]
GALAXY ver3: updated web application for glycosylation profiling based on 3D HPLC map.

Glycobiology. 2022-7-13

[5]
Enhanced Immunomodulatory Effect of Intravenous Immunoglobulin by Fc Galactosylation and Nonfucosylation.

Front Immunol. 2022

[6]
Glutamine-free mammalian expression of recombinant glycoproteins with uniform isotope labeling: an application for NMR analysis of pharmaceutically relevant Fc glycoforms of human immunoglobulin G1.

J Biomol NMR. 2022-4

[7]
Antibody Glycoengineering and Homogeneous Antibody-Drug Conjugate Preparation.

Chem Rec. 2021-11

[8]
Fc galactosylation follows consecutive reaction kinetics and enhances immunoglobulin G hexamerization for complement activation.

MAbs. 2021

[9]
NMR assignments of the N-glycans of the Fc fragment of mouse immunoglobulin G2b glycoprotein.

Biomol NMR Assign. 2021-4

[10]
Afucosylated IgG characterizes enveloped viral responses and correlates with COVID-19 severity.

Science. 2021-2-26

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