• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

使用密度泛函理论(DFT)和分子动力学(MD)模拟研究OCN和CN在类富勒烯SiC笼上的电子结构和吸附情况。

Investigating the electronic structure and adsorption of OCN and CN on SiC Fullerene-like cages using DFT and MD simulations.

作者信息

Sumayli Abdulrahman, Alshahrani Saad M

机构信息

Department of Mechanical Engineering, College of Engineering, Najran University, Najran, Saudi Arabia.

Department of Pharmaceutics, College of Pharmacy, Prince Sattam Bin Abdulaziz University, P.O.Box 173, Al-Kharj, 11942, Saudi Arabia.

出版信息

Sci Rep. 2025 Aug 5;15(1):28637. doi: 10.1038/s41598-025-11683-7.

DOI:10.1038/s41598-025-11683-7
PMID:40764624
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12325571/
Abstract

The adsorption behavior of the toxic molecules OCN and CN onto SiC fullerene-like cages was performed using density functional theory (DFT) calculations with the B3LYP and PBE functionals and a 6-311 + G** basis set, in both vacuum and aqueous phases (PCM model). Strong adsorption of OCN⁻ (nitrogen head) and CN⁻ (carbon head) to the cage surface results from covalent bonding and significant charge transfer from the fullerene-like cage to the anions in both phases. These adsorption processes, involving OCN via its nitrogen head and CN via its carbon head, were both spontaneous and exothermic, as indicated by the calculated adsorption energies and thermodynamic parameters. MD simulations show rapid OCN⁻ covalent bonding to the Si₁₂C₁₂ cage, followed by equilibration within 5 ps. The OCN⁻ exhibits higher mobility than the cage, as indicated by MSD analysis. This dynamic interaction, revealed by g(r) and MSD data, suggests a surface adsorption process. The impacts of OCN and CN interaction with the fullerene-like cage surface were assessed using infrared (IR) absorption spectroscopy. The photoelectron spectrum of OCN and CN adsorption suggests interactions between the fullerene-like cage and these molecules, emphasizing the involvement of strongly bonded electrons in facilitating these interactions. Significantly, during the adsorption process, there was a notable orbital hybridization between anions and fullerenes, as evidenced by the calculated total density of states (TDOS). DFT calculations show that SiC fullerene-like cage exhibits strong binding energies for OCN⁻ and CN⁻, suggesting its potential for highly efficient removal in environmental samples.

摘要

采用密度泛函理论(DFT)计算方法,使用B3LYP和PBE泛函以及6-311+G**基组,在真空和水相(PCM模型)中研究了有毒分子OCN和CN在类SiC富勒烯笼上的吸附行为。在两个相中,OCN⁻(氮端)和CN⁻(碳端)与笼表面的强吸附是由共价键以及从类富勒烯笼到阴离子的显著电荷转移导致的。如计算得到的吸附能和热力学参数所示,这些涉及OCN通过其氮端和CN通过其碳端的吸附过程都是自发且放热的。分子动力学(MD)模拟表明,OCN⁻与Si₁₂C₁₂笼快速形成共价键,随后在5皮秒内达到平衡。均方位移(MSD)分析表明,OCN⁻的迁移率高于笼。g(r)和MSD数据揭示的这种动态相互作用表明了一种表面吸附过程。利用红外(IR)吸收光谱评估了OCN和CN与类富勒烯笼表面相互作用的影响。OCN和CN吸附的光电子能谱表明类富勒烯笼与这些分子之间存在相互作用,强调了强键合电子在促进这些相互作用中的作用。值得注意的是,在吸附过程中,阴离子和富勒烯之间存在明显的轨道杂化,这由计算得到的态密度(TDOS)总和所证明。DFT计算表明,类SiC富勒烯笼对OCN⁻和CN⁻具有很强的结合能,表明其在环境样品中具有高效去除的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e33/12325571/30e148d0ab54/41598_2025_11683_Fig12_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e33/12325571/044bc82e330f/41598_2025_11683_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e33/12325571/fe7c694cfa60/41598_2025_11683_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e33/12325571/cb8ace32aa17/41598_2025_11683_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e33/12325571/788da20bebd7/41598_2025_11683_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e33/12325571/f1db400f85e9/41598_2025_11683_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e33/12325571/77240290f553/41598_2025_11683_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e33/12325571/c8ce02b410ca/41598_2025_11683_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e33/12325571/2dbaaa974354/41598_2025_11683_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e33/12325571/8dc408958c8a/41598_2025_11683_Fig9_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e33/12325571/77d58d1914e8/41598_2025_11683_Fig10_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e33/12325571/7ae8a050b873/41598_2025_11683_Fig11_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e33/12325571/30e148d0ab54/41598_2025_11683_Fig12_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e33/12325571/044bc82e330f/41598_2025_11683_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e33/12325571/fe7c694cfa60/41598_2025_11683_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e33/12325571/cb8ace32aa17/41598_2025_11683_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e33/12325571/788da20bebd7/41598_2025_11683_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e33/12325571/f1db400f85e9/41598_2025_11683_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e33/12325571/77240290f553/41598_2025_11683_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e33/12325571/c8ce02b410ca/41598_2025_11683_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e33/12325571/2dbaaa974354/41598_2025_11683_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e33/12325571/8dc408958c8a/41598_2025_11683_Fig9_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e33/12325571/77d58d1914e8/41598_2025_11683_Fig10_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e33/12325571/7ae8a050b873/41598_2025_11683_Fig11_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e33/12325571/30e148d0ab54/41598_2025_11683_Fig12_HTML.jpg

相似文献

1
Investigating the electronic structure and adsorption of OCN and CN on SiC Fullerene-like cages using DFT and MD simulations.使用密度泛函理论(DFT)和分子动力学(MD)模拟研究OCN和CN在类富勒烯SiC笼上的电子结构和吸附情况。
Sci Rep. 2025 Aug 5;15(1):28637. doi: 10.1038/s41598-025-11683-7.
2
Theoretical investigation of penicillamine adsorption on mgo fullerene-like cages considering solvent effects, electronic properties, and potential biomedical applications.考虑溶剂效应、电子性质及潜在生物医学应用的青霉胺在类富勒烯氧化镁笼上吸附的理论研究
Sci Rep. 2025 Jul 15;15(1):25547. doi: 10.1038/s41598-025-11275-5.
3
[Preparation and chromatographic performance evaluation of hydrophilic interaction chromatography stationary phase based on amino acids].基于氨基酸的亲水作用色谱固定相的制备及色谱性能评价
Se Pu. 2025 Jul;43(7):734-743. doi: 10.3724/SP.J.1123.2025.04015.
4
Intravenous magnesium sulphate and sotalol for prevention of atrial fibrillation after coronary artery bypass surgery: a systematic review and economic evaluation.静脉注射硫酸镁和索他洛尔预防冠状动脉搭桥术后房颤:系统评价与经济学评估
Health Technol Assess. 2008 Jun;12(28):iii-iv, ix-95. doi: 10.3310/hta12280.
5
Conformational Analysis of Neutral and Ionic Arginine Forms Using DFT Methods.使用密度泛函理论方法对中性和离子型精氨酸形式进行构象分析。
ACS Omega. 2025 Jun 20;10(25):26826-26847. doi: 10.1021/acsomega.5c01697. eCollection 2025 Jul 1.
6
Systemic pharmacological treatments for chronic plaque psoriasis: a network meta-analysis.慢性斑块状银屑病的全身药理学治疗:一项网状荟萃分析。
Cochrane Database Syst Rev. 2017 Dec 22;12(12):CD011535. doi: 10.1002/14651858.CD011535.pub2.
7
Opto-electronic properties of Sn-C Co-doped β-GaO at different concentrations: a GGA + U study.不同浓度下Sn-C共掺杂β-GaO的光电性质:一项广义梯度近似(GGA)+U研究
J Mol Model. 2025 Aug 1;31(8):224. doi: 10.1007/s00894-025-06459-9.
8
The Black Book of Psychotropic Dosing and Monitoring.《精神药物剂量与监测黑皮书》
Psychopharmacol Bull. 2024 Jul 8;54(3):8-59.
9
The impact of biological interventions for ulcerative colitis on health-related quality of life.溃疡性结肠炎生物干预措施对健康相关生活质量的影响。
Cochrane Database Syst Rev. 2015 Sep 22;2015(9):CD008655. doi: 10.1002/14651858.CD008655.pub3.
10
Decoupling the Chemical and Mechanical Strain Effect on Steering the CO Activation over CeO-Based Oxides: An Experimental and DFT Approach.解耦化学和机械应变效应以调控基于CeO的氧化物上的CO活化:一种实验和密度泛函理论方法
ACS Appl Mater Interfaces. 2022 Jul 12;14(29):33094-119. doi: 10.1021/acsami.2c05714.

本文引用的文献

1
Accuracy of intermolecular interaction energies, particularly those of hetero-atom containing molecules obtained by DFT calculations with Grimme's D2, D3 and D3BJ dispersion corrections.分子间相互作用能的准确性,特别是通过采用Grimme的D2、D3和D3BJ色散校正的密度泛函理论(DFT)计算得到的含杂原子分子的相互作用能的准确性。
Phys Chem Chem Phys. 2020 Oct 15;22(39):22508-22519. doi: 10.1039/d0cp03679j.
2
Serine adsorption through different functionalities on the BN and Pt-BN nanocages.通过 BN 和 Pt-BN 纳米笼上不同官能团吸附丝氨酸。
Mater Sci Eng C Mater Biol Appl. 2018 Nov 1;92:216-227. doi: 10.1016/j.msec.2018.06.048. Epub 2018 Jun 27.
3
Optimization of toxic biological compound adsorption from aqueous solution onto Silicon and Silicon carbide nanoparticles through response surface methodology.
Mater Sci Eng C Mater Biol Appl. 2017 Aug 1;77:1128-1134. doi: 10.1016/j.msec.2017.03.156. Epub 2017 Mar 20.
4
Crystal structure, spectroscopic and theoretical studies on two Schiff base compounds of 2,6-dichlorobenzylidene-2,4-dichloroaniline and 2,4-dichlorobenzylidene-2,4-dichloroaniline.2,6-二氯亚苄基-2,4-二氯苯胺和2,4-二氯亚苄基-2,4-二氯苯胺两种席夫碱化合物的晶体结构、光谱及理论研究
Spectrochim Acta A Mol Biomol Spectrosc. 2015 Mar 15;139:271-8. doi: 10.1016/j.saa.2014.10.099. Epub 2014 Nov 15.
5
Small molecule-based ratiometric fluorescence probes for cations, anions, and biomolecules.用于阳离子、阴离子和生物分子的基于小分子的比率荧光探针。
Chem Soc Rev. 2015 Jul 7;44(13):4185-91. doi: 10.1039/c4cs00280f. Epub 2014 Oct 6.
6
Silicon carbide: a versatile material for biosensor applications.碳化硅:一种用于生物传感器应用的多功能材料。
Biomed Microdevices. 2013 Apr;15(2):353-68. doi: 10.1007/s10544-013-9742-3.
7
Multiwfn: a multifunctional wavefunction analyzer.Multiwfn:一款多功能波函数分析软件。
J Comput Chem. 2012 Feb 15;33(5):580-92. doi: 10.1002/jcc.22885. Epub 2011 Dec 8.
8
Surface charges and optical characteristic of colloidal cubic SiC nanocrystals.胶体立方碳化硅纳米晶体的表面电荷和光学特性。
Nanoscale Res Lett. 2011 Jul 15;6(1):454. doi: 10.1186/1556-276X-6-454.
9
Chromogenic and fluorogenic chemosensors and reagents for anions. A comprehensive review of the year 2009.用于阴离子的生色和荧光化学传感器和试剂。对 2009 年的全面回顾。
Chem Soc Rev. 2011 May;40(5):2593-643. doi: 10.1039/c0cs00015a. Epub 2011 Jan 28.
10
cclib: a library for package-independent computational chemistry algorithms.CCLib:一个用于独立于软件包的计算化学算法的库。
J Comput Chem. 2008 Apr 15;29(5):839-45. doi: 10.1002/jcc.20823.