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光遗传学酶:深入探讨其设计与影响

Optogenetic enzymes: A deep dive into design and impact.

作者信息

Basu Roy Tanaya, Heidari Mana, Dokholyan Nikolay V

机构信息

Department of Neurology, University of Virginia, School of Medicine, Charlottesville, VA, 22903, United States.

Department of Neuroscience & Experimental Therapeutics, Penn State College of Medicine, Hershey, PA, 17033, USA.

出版信息

Curr Opin Struct Biol. 2025 Aug 5;94:103126. doi: 10.1016/j.sbi.2025.103126.

DOI:10.1016/j.sbi.2025.103126
PMID:40769055
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12329243/
Abstract

Optogenetically regulated enzymes offer unprecedented spatiotemporal control over protein activity, intermolecular interactions, and intracellular signaling. Many design strategies have been developed for their fabrication based on the principles of intrinsic allostery, oligomerization or 'split' status, intracellular compartmentalization, and steric hindrance. In addition to employing photosensory domains as part of the traditional optogenetic toolset, the specificity of effector domains has also been leveraged for endogenous applications. Here, we discuss the dynamics of light activation while providing a bird's eye view of the crafting approaches, targets, and impact of optogenetic enzymes in orchestrating cellular functions, as well as the bottlenecks and an outlook into the future.

摘要

光遗传学调控的酶为蛋白质活性、分子间相互作用和细胞内信号传导提供了前所未有的时空控制。基于内在变构、寡聚化或“分裂”状态、细胞内区室化和空间位阻原理,已经开发了许多用于其制造的设计策略。除了将光感域用作传统光遗传学工具集的一部分外,效应域的特异性也已用于内源性应用。在这里,我们讨论光激活的动力学,同时鸟瞰光遗传学酶在协调细胞功能中的构建方法、靶点和影响,以及瓶颈和未来展望。

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本文引用的文献

1
The Evolving Landscape of Protein Allostery: From Computational and Experimental Perspectives.蛋白质变构的演变态势:从计算和实验视角看
J Mol Biol. 2025 Mar 4:169060. doi: 10.1016/j.jmb.2025.169060.
2
Large-scale control over collective cell migration using light-activated epidermal growth factor receptors.利用光激活的表皮生长因子受体对集体细胞迁移进行大规模控制。
Cell Syst. 2025 Mar 19;16(3):101203. doi: 10.1016/j.cels.2025.101203. Epub 2025 Mar 3.
3
Autonomous Nucleic Acid and Protein Nanocomputing Agents Engineered to Operate in Living Cells.经设计可在活细胞中运行的自主核酸和蛋白质纳米计算剂。
ACS Nano. 2025 Jan 21;19(2):1865-1883. doi: 10.1021/acsnano.4c13663. Epub 2025 Jan 6.
4
Signaling by a bacterial phytochrome histidine kinase involves a conformational cascade reorganizing the dimeric photoreceptor.细菌光致异构酶组氨酸激酶的信号转导涉及一个构象级联反应,该反应重新组织二聚体光受体。
Nat Commun. 2024 Aug 10;15(1):6853. doi: 10.1038/s41467-024-50412-y.
5
Crystal structure of the photosensory module from a PAS-less cyanobacterial phytochrome as Pr shows a mix of dark-adapted and photoactivated features.无 PAS 结构的蓝细菌光敏色素光感模块的晶体结构作为 Pr 显示出暗适应和光激活特征的混合。
J Biol Chem. 2024 Jul;300(7):107369. doi: 10.1016/j.jbc.2024.107369. Epub 2024 May 14.
6
A light-controlled phospholipase C for imaging of lipid dynamics and controlling neural plasticity.一种光控的磷脂酶 C,用于成像脂质动力学和控制神经可塑性。
Cell Chem Biol. 2024 Jul 18;31(7):1336-1348.e7. doi: 10.1016/j.chembiol.2024.03.001. Epub 2024 Apr 5.
7
Ultralow Background Membrane Editors for Spatiotemporal Control of Phosphatidic Acid Metabolism and Signaling.用于磷脂酸代谢和信号时空控制的超低背景膜编辑器
ACS Cent Sci. 2024 Jan 30;10(3):543-554. doi: 10.1021/acscentsci.3c01105. eCollection 2024 Mar 27.
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Illuminating the inner workings of a natural protein switch: Blue-light sensing in LOV-activated diguanylate cyclases.揭示天然蛋白开关的内部工作原理: LOV 激活型双鸟苷酸环化酶中的蓝光感应。
Sci Adv. 2023 Aug 4;9(31):eadh4721. doi: 10.1126/sciadv.adh4721. Epub 2023 Aug 2.
9
A noncommutative combinatorial protein logic circuit controls cell orientation in nanoenvironments.一种非交换组合蛋白逻辑电路控制纳米环境中的细胞定向。
Sci Adv. 2023 May 26;9(21):eadg1062. doi: 10.1126/sciadv.adg1062.
10
Engineered allostery in light-regulated LOV-Turbo enables precise spatiotemporal control of proximity labeling in living cells.光调控 LOV-Turbo 的工程变构作用使活细胞中邻近标记的精确时空控制成为可能。
Nat Methods. 2023 Jun;20(6):908-917. doi: 10.1038/s41592-023-01880-5. Epub 2023 May 15.