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利用计算药物再利用和分子模拟靶向程序性死亡配体1进行抗癌治疗。

Targeting programmed death ligand 1 for anticancer therapy using computational drug repurposing and molecular simulations.

作者信息

Khan Mohd Shahnawaz, Shamsi Anas, Shahwan Moyad, Dinislam Khuzin, Yadav Dharmendra Kumar

机构信息

Department of Biochemistry, College of Science, King Saud University, Riyadh, Kingdom of Saudi Arabia.

Centre of Medical and Bio-Allied Health Sciences Research, Ajman University, Ajman, UAE.

出版信息

Sci Rep. 2025 Aug 6;15(1):28742. doi: 10.1038/s41598-025-14503-0.

DOI:10.1038/s41598-025-14503-0
PMID:40770405
Abstract

Discovering new drug candidates for complex diseases like cancer is a significant challenge in modern drug discovery. Drug repurposing provides a cost-effective and time-efficient strategy to identify existing drugs for novel therapeutic targets. Here, we exploited an integrated in-silico approach to identify repurposed drugs that could inhibit programmed death-ligand 1 (PD-L1). PD-L1 is a crucial protein that plays a pivotal role in immune checkpoint regulation, making it a potential target for cancer treatment. Using a drug repurposing approach, we combined molecular docking and molecular dynamics (MD) simulations to study the binding efficiency of FDA-approved drug molecules targeting PD-L1. From the binding affinities and interaction analysis of the first screening, several molecules emerged as PD-L1 binders. Two of them, Lumacaftor and Vedaprofen, showed appropriate drug profiles and biological activities and stood out as highly potent binding partners of the PD-L1. MD simulation was performed for 500 ns to assess the conformational and stability changes of PD-L1-Lumacaftor and PD-L1-Vedaprofen complexes. The simulations revealed sustained structural integrity and stable binding of both complexes throughout the 500 ns trajectories, supporting their potential as PD-L1 inhibitors. While the findings are promising, they remain computational and require experimental validation to confirm biological efficacy and specificity. This study also emphasizes the role of bioinformatics approaches in drug repurposing that can help in the identification of novel anticancer agents.

摘要

在现代药物研发中,为癌症等复杂疾病发现新的候选药物是一项重大挑战。药物再利用提供了一种经济高效且省时的策略,以识别针对新治疗靶点的现有药物。在此,我们采用了一种综合的计算机模拟方法来识别可抑制程序性死亡配体1(PD-L1)的再利用药物。PD-L1是一种关键蛋白,在免疫检查点调节中起关键作用,使其成为癌症治疗的潜在靶点。我们采用药物再利用方法,结合分子对接和分子动力学(MD)模拟,研究了美国食品药品监督管理局(FDA)批准的靶向PD-L1的药物分子的结合效率。从首次筛选的结合亲和力和相互作用分析中,出现了几种作为PD-L1结合剂的分子。其中两种,鲁马卡托和韦达洛芬,显示出合适的药物特性和生物活性,并作为PD-L1的高效结合伙伴脱颖而出。进行了500纳秒的MD模拟,以评估PD-L1-鲁马卡托和PD-L1-韦达洛芬复合物的构象和稳定性变化。模拟结果显示,在整个500纳秒的轨迹中,两种复合物都保持了持续的结构完整性和稳定的结合,支持了它们作为PD-L1抑制剂的潜力。虽然这些发现很有前景,但它们仍然是基于计算的,需要实验验证来确认生物疗效和特异性。这项研究还强调了生物信息学方法在药物再利用中的作用,有助于识别新型抗癌药物。

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本文引用的文献

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Front Pharmacol. 2024 Jun 28;15:1424175. doi: 10.3389/fphar.2024.1424175. eCollection 2024.
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Targeting PDE4A for therapeutic potential: exploiting drug repurposing approach through virtual screening and molecular dynamics.以磷酸二酯酶4A(PDE4A)为治疗靶点:通过虚拟筛选和分子动力学开发药物再利用方法。
J Biomol Struct Dyn. 2024 Jan 29:1-13. doi: 10.1080/07391102.2024.2308764.
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Structural and biological characterization of pAC65, a macrocyclic peptide that blocks PD-L1 with equivalent potency to the FDA-approved antibodies.pAC65 的结构和生物学特性研究,一种能够与 FDA 批准的抗体等效阻断 PD-L1 的大环肽。
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InstaDock: A single-click graphical user interface for molecular docking-based virtual high-throughput screening.InstaDock:一种基于分子对接的虚拟高通量筛选的一键式图形用户界面。
Brief Bioinform. 2021 Jul 20;22(4). doi: 10.1093/bib/bbaa279.
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Resistance to PD-1/PD-L1 blockade cancer immunotherapy: mechanisms, predictive factors, and future perspectives.对PD-1/PD-L1阻断癌症免疫疗法的耐药性:机制、预测因素及未来展望。
Biomark Res. 2020 Aug 26;8:35. doi: 10.1186/s40364-020-00212-5. eCollection 2020.
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Epigenetic strategies synergize with PD-L1/PD-1 targeted cancer immunotherapies to enhance antitumor responses.表观遗传策略与PD-L1/PD-1靶向癌症免疫疗法协同作用,以增强抗肿瘤反应。
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