Aneesh Anagha, Streu Kristina, Daly Clyde A
Department of Chemistry, Haverford College, 370 Lancaster Ave Haverford, Haverford, Pennsylvania 19041, United States.
J Phys Chem B. 2025 Aug 21;129(33):8509-8520. doi: 10.1021/acs.jpcb.5c05298. Epub 2025 Aug 12.
The terminal alkyne C≡C stretch has a large Raman scattering cross section in the "silent" region for biomolecules. Experimental work taking advantage of this property provide an impetus for the development of theoretical tools addressing the vibration. In prior work, we have developed a localized normal mode method for computing terminal alkyne vibrational frequencies using a discrete variable representation of the potential energy surface. Using this method and molecular dynamics simulations, we interpret the unusually broad Raman spectrum of alkynes solvated in triethylamine. Energy decomposition analysis is performed on alkyne-triethylamine dimers to determine that charge transfer, electrostatics, and Pauli repulsion have large effects on the frequency. Molecular dynamics simulations of triethylamine-solvated alkynes are performed and uncover that the terminal alkyne hydrogen interacts strongly with the triethylamine nitrogen. Interactions persist for 3-10 ps. Using this data, a spectroscopic map for terminal alkynes is developed and used to compute Raman spectra for alkynes in triethylamine. We find that the broad experimental spectra result from the combination of a population of alkynes associated with the solvent nitrogens and a population not associated with those nitrogens. This work sets the stage for investigations of alkynes in more complex environments like proteins and nanomaterial surfaces.
末端炔烃C≡C伸缩振动在生物分子的“沉默”区域具有较大的拉曼散射截面。利用这一特性的实验工作为开发处理该振动的理论工具提供了动力。在之前的工作中,我们开发了一种局域正则模式方法,使用势能面的离散变量表示来计算末端炔烃的振动频率。利用该方法和分子动力学模拟,我们解释了溶解在三乙胺中的炔烃异常宽的拉曼光谱。对炔烃-三乙胺二聚体进行能量分解分析,以确定电荷转移、静电作用和泡利排斥对频率有很大影响。进行了三乙胺溶剂化炔烃的分子动力学模拟,发现末端炔烃氢与三乙胺氮强烈相互作用。相互作用持续3 - 10皮秒。利用这些数据,绘制了末端炔烃的光谱图,并用于计算三乙胺中炔烃的拉曼光谱。我们发现,实验得到的宽光谱是由与溶剂氮相关的炔烃群体和与那些氮不相关的炔烃群体共同作用的结果。这项工作为研究蛋白质和纳米材料表面等更复杂环境中的炔烃奠定了基础。