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核纤层蛋白的液-液相分离驱动了A型核纤层蛋白心肌病突变中染色质组织的改变。

Liquid-liquid phase separation of lamin drives altered chromatin organization in cardiomyopathic mutations of lamin A.

作者信息

Nath Subhradip, Dutta Shuvadip, Sarkar Shreyasi Dey, Sengupta Duhita, Mitra Mithun K, Sengupta Kaushik

机构信息

Biophysics and Structural Genomics Division, Saha Institute of Nuclear Physics, Kolkata 700064, West Bengal, India.

Homi Bhabha National Institute, Mumbai 400094, Maharashtra, India.

出版信息

Nucleic Acids Res. 2025 Jul 19;53(14). doi: 10.1093/nar/gkaf615.

Abstract

Lamins are intermediate filaments constituting the nuclear lamina which maintains the structural integrity of the nucleus and play a key role in the spatiotemporal genome organization. Mutations in lamin A/C have been associated with a plethora of diseases including dilated cardiomyopathy. In this study, we focused on lamin A mutants E161K and K97E which are widely reported in patients afflicted with dilated cardiomyopathy. We established that these mutations cause large scale disruption of the peripheral lamina and consequent heterochromatin (HC) organization, along with the formation of lamin A aggregates inside the nucleoplasm. Using coarse-grained polymer simulations, we explored the interplay between lamin, nuclear membrane, and chromatin showing that disruptions in these interactions can reproduce the experimental phenotypes. Simulations also predict altered positioning depending on HC content and altered lamin dynamics in E161K and K97E mutants. The predictions from the simulations were verified using 3D FISH to delineate the reorganization of chromosome territories in these mutants. Based on the disengagement of lamin A foci from HC, we subsequently investigated the dynamic properties of the mutant aggregates using advanced imaging techniques. Through this, we report that mutant lamin aggregates show internal rearrangement and external exchange at the mesoscopic-level reminiscent of liquid-liquid phase separation.

摘要

核纤层蛋白是构成核纤层的中间丝,维持细胞核的结构完整性,并在时空基因组组织中发挥关键作用。核纤层蛋白A/C的突变与多种疾病相关,包括扩张型心肌病。在本研究中,我们聚焦于在扩张型心肌病患者中广泛报道的核纤层蛋白A突变体E161K和K97E。我们证实这些突变会导致外周核纤层的大规模破坏以及随之而来的异染色质组织紊乱,同时在核质内形成核纤层蛋白A聚集体。通过粗粒度聚合物模拟,我们探究了核纤层蛋白、核膜和染色质之间的相互作用,结果表明这些相互作用的破坏能够重现实验表型。模拟还预测了取决于异染色质含量的定位改变以及E161K和K97E突变体中核纤层蛋白动力学的改变。使用三维荧光原位杂交技术验证了模拟预测,以描绘这些突变体中染色体区域的重组情况。基于核纤层蛋白A焦点与异染色质的脱离,我们随后使用先进成像技术研究了突变体聚集体的动态特性。通过这项研究,我们报告突变体核纤层蛋白聚集体在介观水平上表现出内部重排和外部交换,类似于液-液相分离。

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