单链DNA结合蛋白是结构LDB1蛋白复合体的重要组成部分。

Single-stranded DNA-binding proteins are essential components of the architectural LDB1 protein complex.

作者信息

Wang Xiaokang, Aboreden Nicholas G, Cai Ying, Lam Jessica C, Henderson Kate A, Xiang Jiaqi, Giardine Belinda M, Hardison Ross C, Keller Cheryl A, Nagarajan Lalitha, Brandt Stephen J, Blobel Gerd A

机构信息

Division of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.

Division of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA, USA; Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.

出版信息

Mol Cell. 2025 Aug 21;85(16):3074-3089.e8. doi: 10.1016/j.molcel.2025.07.012. Epub 2025 Aug 12.

Abstract

Transcriptional enhancers are brought into proximity with promoters via chromatin looping. The architectural transcription cofactor LDB1 facilitates spatial connectivity among enhancers and promoters, but whether this occurs through simple dimerization or requires heterotypic protein assemblies is unknown. Here, we investigated the role of single-stranded DNA-binding proteins (SSBPs) in regulating LDB1-mediated chromatin looping and transcription. SSBP2, SSBP3, and SSBP4 colocalize with LDB1 genome wide. Among these, only SSBP3 is essential for murine erythroid cell viability, LDB1 function, and transcription. LDB1, but not single-stranded DNA, is the predominant genome-wide tether of SSBP3 to chromatin. SSBP3 depletion in SSBP2/4 knockout cells globally weakened LDB1-dependent chromatin loops and lowered nascent transcription without impacting LDB1's chromatin binding. Chromatin tethering experiments revealed that SSBP3 and LDB1 mutually depend on each other to form looped contacts. SSBP3 stabilizes LDB1 dimerization in vitro, providing a possible mechanism. SSBPs emerge as key functional components of the architectural LDB1 complex.

摘要

转录增强子通过染色质环化与启动子靠近。结构转录辅因子LDB1促进增强子与启动子之间的空间连接,但这是通过简单的二聚化发生,还是需要异型蛋白质组装尚不清楚。在这里,我们研究了单链DNA结合蛋白(SSBP)在调节LDB1介导的染色质环化和转录中的作用。SSBP2、SSBP3和SSBP4在全基因组范围内与LDB1共定位。其中,只有SSBP3对小鼠红细胞的活力、LDB1功能和转录至关重要。LDB1而非单链DNA是全基因组范围内SSBP3与染色质的主要连接物。在SSBP2/4基因敲除细胞中耗尽SSBP3会在整体上削弱LDB1依赖性染色质环,并降低新生转录水平,而不会影响LDB1与染色质的结合。染色质连接实验表明,SSBP3和LDB1相互依赖以形成环状接触。SSBP3在体外稳定LDB1二聚化,提供了一种可能的机制。SSBP成为结构LDB1复合体的关键功能组件。

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