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基于变压器的T1纤维束成像

TRANSFORMER-BASED T1-TRACTOGRAPHY.

作者信息

Yoon Jongyeon, Rao Mingxing, McMaster Elyssa M, Cho Chloe, Newlin Nancy R, Schilling Kurt G, Landman Bennett A, Moyer Daniel

机构信息

Department of Computer Science, Vanderbilt University, Nashville, TN, USA.

Department of Electrical and Computer Engineering, Vanderbilt University, Nashville, TN, USA.

出版信息

Proc IEEE Int Symp Biomed Imaging. 2025;2025. doi: 10.1109/isbi60581.2025.10981144. Epub 2025 May 12.

DOI:10.1109/isbi60581.2025.10981144
PMID:40814567
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12345601/
Abstract

Diffusion MRI (dMRI) streamline tractography has been the gold standard for non-invasive estimation of white matter (WM) pathways in the human brain. Recent advancements in deep learning have enabled the generation of streamlines from T1-weighted (T1w) MRI, a more common imaging method. The accuracy of current T1w tracking methods is limited by their recurrent architecture. In the present work, we modify a current state-of-the-art T1w tractography method (CoRNN), replacing recurrent units and its sequential representation with Transformer modules, and modifying both the representation and the prediction network for the fiber orientation distributions. We demonstrate that these changes provide substantial performance benefits over the baseline method, producing high angular consistency with the gold standard dMRI tractogram in healthy normal adult humans.

摘要

扩散磁共振成像(dMRI)流线追踪术一直是无创估计人脑白质(WM)通路的金标准。深度学习的最新进展使得能够从T1加权(T1w)MRI(一种更常见的成像方法)生成流线。当前T1w追踪方法的准确性受到其循环架构的限制。在本研究中,我们修改了当前最先进的T1w追踪方法(CoRNN),用Transformer模块替换循环单元及其顺序表示,并修改了纤维方向分布的表示和预测网络。我们证明,这些改变比基线方法具有显著的性能优势,在健康正常成年人中与金标准dMRI纤维束成像具有高度的角度一致性。

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本文引用的文献

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Learning white matter subject-specific segmentation from structural MRI.从结构 MRI 中学习白质特定主体分割。
Med Phys. 2022 Apr;49(4):2502-2513. doi: 10.1002/mp.15495. Epub 2022 Feb 7.
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MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation.MRtrix3:一个用于医学图像处理和可视化的快速、灵活、开放的软件框架。
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Tractography and machine learning: Current state and open challenges.束流追踪与机器学习:现状与开放性挑战。
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3D whole brain segmentation using spatially localized atlas network tiles.使用空间局部化图谱网络瓦片进行 3D 全脑分割。
Neuroimage. 2019 Jul 1;194:105-119. doi: 10.1016/j.neuroimage.2019.03.041. Epub 2019 Mar 23.
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TractSeg - Fast and accurate white matter tract segmentation.TractSeg-快速准确的白质束分割。
Neuroimage. 2018 Dec;183:239-253. doi: 10.1016/j.neuroimage.2018.07.070. Epub 2018 Aug 4.
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Recognition of white matter bundles using local and global streamline-based registration and clustering.基于局部和全局流线的配准和聚类来识别白质束。
Neuroimage. 2018 Apr 15;170:283-295. doi: 10.1016/j.neuroimage.2017.07.015. Epub 2017 Jul 13.
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White matter tractography for neurosurgical planning: A topography-based review of the current state of the art.用于神经外科手术规划的白质纤维束成像:基于地形学的当前技术水平综述。
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Neuroimage. 2016 Jan 15;125:1063-1078. doi: 10.1016/j.neuroimage.2015.10.019. Epub 2015 Oct 20.
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