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通过众包得出的胎盘表观遗传时钟:对产科加速衰老研究的启示。

Placental epigenetic clocks derived from crowdsourcing: Implications for the study of accelerated aging in obstetrics.

作者信息

Bhatti Gaurav, Sufriyana Herdiantri, Romero Roberto, Patel Tushar, Tekola-Ayele Fasil, Alsaggaf Ibrahim, Gomez-Lopez Nardhy, Su Emily C Y, Done Bogdan, Hoffmann Steve, van Bömmel Alena, Wan Cen, Albrecht Jake, Novak Charles, Chaiworapongsa Tinnakorn, Sirota Marina, Aghaeepour Nima, Stolovitzky Gustavo, Bryant David R, Tarca Adi L

机构信息

Center for Molecular Medicine and Genetics, Wayne State University, Detroit, MI 48202, USA.

Institute of Biomedical Informatics, College of Medicine, National Yang Ming Chiao Tung University, Taipei 112304, Taiwan.

出版信息

iScience. 2025 Jul 23;28(8):113181. doi: 10.1016/j.isci.2025.113181. eCollection 2025 Aug 15.

Abstract

Epigenetic gestational age acceleration has been implicated in obstetric syndromes including preeclampsia, yet robust conclusions require accurate and unbiased epigenetic age models. Herein, we curated 1,842 public placental methylomes and organized a DREAM challenge to develop models of gestational age. Participants were blinded to the test data that we generated from 384 placentas encompassing normal and complicated pregnancies. Models developed during and post-challenge compared favorably to existing models in terms of accuracy, yet they were better calibrated throughout gestation and indicated that reports of accelerated epigenetic aging in preterm preeclampsia were likely due to modeling artifacts. The models show that accelerated aging is associated with a decrease in birthweight percentiles in male neonates delivered at term. By contrast, preterm accelerated aging was protective against delivery of a small-for-gestational-age neonate regardless of fetal sex. This work informs our understanding of the fetal sex-dimorphic role of the placenta epigenome in obstetrics.

摘要

表观遗传妊娠年龄加速与包括先兆子痫在内的产科综合征有关,但要得出有力结论需要准确且无偏差的表观遗传年龄模型。在此,我们整理了1842个公开的胎盘甲基化组,并组织了一场DREAM挑战赛来开发妊娠年龄模型。参与者对我们从384个胎盘(涵盖正常和复杂妊娠)中生成的测试数据不知情。在挑战赛期间及之后开发的模型在准确性方面优于现有模型,但在整个妊娠期校准效果更好,这表明早产先兆子痫中表观遗传衰老加速的报告可能是由于建模假象。这些模型表明,加速衰老与足月出生的男婴出生体重百分位数下降有关。相比之下,早产加速衰老对小于胎龄儿的分娩具有保护作用,无论胎儿性别如何。这项工作有助于我们理解胎盘表观基因组在产科中的胎儿性别二态性作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4729/12356336/0eaaf62c6fff/fx1.jpg

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