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用于纽结数据分析的多尺度琼斯多项式和持久琼斯多项式。

Multi-scale Jones polynomial and persistent Jones polynomial for knot data analysis.

作者信息

Song Ruzhi, Li Fengling, Wu Jie, Lei Fengchun, Wei Guo-Wei

机构信息

School of Mathematical Sciences, Dalian University of Technology, Dalian 116024, Liaoning, China.

Beijing Institute of Mathematical Sciences and Applications, Beijing 101408, China.

出版信息

AIMS Math. 2025;10(1):1463-1487. doi: 10.3934/math.2025068. Epub 2025 Jan 22.

DOI:10.3934/math.2025068
PMID:40838040
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12363994/
Abstract

Many structures in science, engineering, and art can be viewed as curves in 3-space. The entanglement of these curves plays a crucial role in determining the functionality and physical properties of materials. Many concepts in knot theory provide theoretical tools to explore the complexity and entanglement of curves in 3-space. However, classical knot theory focuses on global topological properties and lacks the consideration of local structural information, which is critical in practical applications. In this work, two localized models based on the Jones polynomial were proposed, namely, the multi-scale Jones polynomial and the persistent Jones polynomial. The stability of these models, especially the insensitivity of the multi-scale and persistent Jones polynomial models to small perturbations in curve collections, was analyzed, thus ensuring their robustness for real-world applications.

摘要

科学、工程和艺术中的许多结构都可以看作是三维空间中的曲线。这些曲线的缠结对确定材料的功能和物理性质起着至关重要的作用。纽结理论中的许多概念提供了理论工具,用于探索三维空间中曲线的复杂性和缠结。然而,经典纽结理论侧重于全局拓扑性质,缺乏对局部结构信息的考虑,而局部结构信息在实际应用中至关重要。在这项工作中,提出了两种基于琼斯多项式的局部化模型,即多尺度琼斯多项式和持久琼斯多项式。分析了这些模型的稳定性,特别是多尺度和持久琼斯多项式模型对曲线集合中小扰动的不敏感性,从而确保了它们在实际应用中的鲁棒性。

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本文引用的文献

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The Local Topological Free Energy of the SARS-CoV-2 Spike Protein.严重急性呼吸综合征冠状病毒2刺突蛋白的局部拓扑自由能
Polymers (Basel). 2022 Jul 26;14(15):3014. doi: 10.3390/polym14153014.
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The protein folding rate and the geometry and topology of the native state.蛋白质折叠速率和天然状态的几何形状和拓扑结构。
Sci Rep. 2022 Apr 16;12(1):6384. doi: 10.1038/s41598-022-09924-0.
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The local topological free energy of proteins.蛋白质的局域拓扑自由能。
J Theor Biol. 2021 Nov 21;529:110854. doi: 10.1016/j.jtbi.2021.110854. Epub 2021 Aug 3.
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To Knot or Not to Knot: Multiple Conformations of the SARS-CoV-2 Frameshifting RNA Element.是否打结:SARS-CoV-2 框架移位 RNA 元件的多种构象。
J Am Chem Soc. 2021 Aug 4;143(30):11404-11422. doi: 10.1021/jacs.1c03003. Epub 2021 Jul 20.
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Atom-specific persistent homology and its application to protein flexibility analysis.原子特异性持久同调及其在蛋白质柔性分析中的应用。
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Persistent Cohomology for Data With Multicomponent Heterogeneous Information.具有多组分异构信息的数据的持久上同调
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