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人Toll样受体3错义单核苷酸多态性的计算机模拟分析及其与癌症的潜在关联

"In silico analysis of human TLR3 missense single nucleotide polymorphisms and their potential association with cancer".

作者信息

Agarwal Mohini, Kumar Manish, Dahiya Sarthak, Kumar Anoop, Tripathi Rupal, Bala Kumud

机构信息

Therapeutics and Molecular Diagnostic Lab, J-3 Block, Amity Institute of Biotechnology, Amity University, Noida, Uttar Pradesh, India.

Amity Institute of Pharmacy, Amity University, Noida, India.

出版信息

Sci Rep. 2025 Aug 22;15(1):30837. doi: 10.1038/s41598-025-05599-5.

DOI:10.1038/s41598-025-05599-5
PMID:40847033
Abstract

Cervical cancer is a prevalent malignancy worldwide and represents a significant health burden for women. Toll-like receptors (TLRs) are crucial components of the innate immune system and play a vital role in recognizing pathogen-associated molecular patterns. Among the TLRs, TLR3 has been implicated in the defense against viral infections, including human papillomavirus (HPV), the primary etiological agent of cervical cancer. Missense single-nucleotide polymorphisms (SNPs) in the TLR3 gene can alter its protein structure and potentially influence its function, leading to variations in immune responses and disease susceptibility. This study aimed to investigate the impact of TLR3 missense SNPs on cervical cancer development through in silico methods. A comprehensive analysis was performed using various computational tools and databases to predict the functional consequences of identified TLR3 missense SNPs. The selection criteria for SNPs included their reported association with cervical cancer or their potential effects on TLR3 structure and function. Three extremely detrimental TLR-3 nsSNPs, namely N284I (rs5743316), C37R(rs752889035), and L360P(rs768091235), have been found among the 150 nsSNPs that have so far been reported in the dbSNP database. The in silico analysis suggests that these genetic variations may contribute to the development and progression of cervical cancer by modulating TLR3 function. Further experimental studies are warranted to validate these findings and elucidate the underlying mechanisms, which may aid in developing novel therapeutic strategies for cervical cancer prevention and treatment.

摘要

宫颈癌是全球范围内一种常见的恶性肿瘤,对女性健康构成重大负担。Toll样受体(TLRs)是先天免疫系统的关键组成部分,在识别病原体相关分子模式方面发挥着至关重要的作用。在TLRs中,TLR3参与了针对包括人乳头瘤病毒(HPV)在内的病毒感染的防御,HPV是宫颈癌的主要病原体。TLR3基因中的错义单核苷酸多态性(SNPs)可改变其蛋白质结构,并可能影响其功能,导致免疫反应和疾病易感性的差异。本研究旨在通过计算机模拟方法研究TLR3错义SNPs对宫颈癌发生发展的影响。使用各种计算工具和数据库进行了全面分析,以预测已鉴定的TLR3错义SNPs的功能后果。SNPs的选择标准包括其与宫颈癌的报道关联或其对TLR3结构和功能的潜在影响。在dbSNP数据库中迄今报道的150个非同义单核苷酸多态性(nsSNPs)中,发现了三个极其有害的TLR-3 nsSNPs,即N284I(rs5743316)、C37R(rs752889035)和L360P(rs768091235)。计算机模拟分析表明,这些基因变异可能通过调节TLR3功能促进宫颈癌的发生和发展。有必要进行进一步的实验研究来验证这些发现并阐明潜在机制,这可能有助于开发预防和治疗宫颈癌的新治疗策略。

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本文引用的文献

1
Integrating Artificial Intelligence and Bioinformatics Methods to Identify Disruptive STAT1 Variants Impacting Protein Stability and Function.整合人工智能和生物信息学方法以鉴定影响蛋白质稳定性和功能的STAT1破坏性变体。
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The dual role of toll-like receptors in COVID-19: Balancing protective immunity and immunopathogenesis.Toll样受体在COVID-19中的双重作用:平衡保护性免疫与免疫病理发生
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Accurate structure prediction of biomolecular interactions with AlphaFold 3.
利用 AlphaFold 3 进行生物分子相互作用的精确结构预测。
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Exploring TLR signaling pathways as promising targets in cervical cancer: The road less traveled.探讨 TLR 信号通路作为宫颈癌有前途的靶点:少有人走的路。
Int Rev Cell Mol Biol. 2024;385:227-261. doi: 10.1016/bs.ircmb.2023.11.005. Epub 2024 Jan 12.
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Global cancer statistics 2022: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.2022 年全球癌症统计数据:全球 185 个国家和地区 36 种癌症的发病率和死亡率全球估计数。
CA Cancer J Clin. 2024 May-Jun;74(3):229-263. doi: 10.3322/caac.21834. Epub 2024 Apr 4.
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Toll-like receptor-guided therapeutic intervention of human cancers: molecular and immunological perspectives. Toll 样受体导向的人类癌症治疗干预:分子和免疫学观点。
Front Immunol. 2023 Sep 26;14:1244345. doi: 10.3389/fimmu.2023.1244345. eCollection 2023.
7
Computational analysis of sodium-dependent phosphate transporter SLC20A1/PiT1 gene identifies missense variations C573F, and T58A as high-risk deleterious SNPs.通过对钠依赖型磷酸盐转运蛋白 SLC20A1/PiT1 基因的计算分析,鉴定出错义变异 C573F 和 T58A 为高风险有害 SNP。
J Biomol Struct Dyn. 2024 May;42(8):4072-4086. doi: 10.1080/07391102.2023.2218939. Epub 2023 Jun 7.
8
The pathogenic effect of SNPs on structure and function of human TLR4 using a computational approach.采用计算方法研究 SNP 对人 TLR4 结构和功能的致病效应。
J Biomol Struct Dyn. 2023;41(21):12387-12400. doi: 10.1080/07391102.2023.2166998. Epub 2023 Jan 17.
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Front Pharmacol. 2022 Jun 6;13:865614. doi: 10.3389/fphar.2022.865614. eCollection 2022.
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The Interleukin-1 (IL-1) Superfamily Cytokines and Their Single Nucleotide Polymorphisms (SNPs).白细胞介素-1(IL-1)超家族细胞因子及其单核苷酸多态性(SNPs)。
J Immunol Res. 2022 Mar 26;2022:2054431. doi: 10.1155/2022/2054431. eCollection 2022.