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利用线粒体DNA和多变量分析揭示越南中部沿海地区(辐鳍鱼纲,鲷科)的遗传结构和进化历史:一项案例研究

Uncovering the genetic structure and evolutionary history of (Actinopterygii, Sparidae) using mitochondrial DNA and multivariate analyses: A case study of coastal populations in Central Vietnam.

作者信息

Nguyen Ty, Bui Van Loi, Hoang Le Thuy Lan, Tran Thi Kim Anh, Nguyen Xuan Huy, Tran Van Giang

机构信息

Faculty of Biology, University of Education, Hue University, Hue, Vietnam Faculty of Biology, University of Education, Hue University Hue Vietnam.

Hue University, Hue, Vietnam Hue University Hue Vietnam.

出版信息

Biodivers Data J. 2025 Aug 22;13:e164274. doi: 10.3897/BDJ.13.e164274. eCollection 2025.

Abstract

The yellowfin seabream (), a commercially important marine fish in Vietnam, faces threats from overfishing and habitat degradation and requires a deeper understanding of its genetic structure and evolutionary history for effective conservation. This study investigated the genetic diversity, population structure and demographic history of across three populations in Central Vietnam using mitochondrial control region (mtCR) sequences and multivariate analyses. A total of 125 fish samples were collected between January 2023 and June 2024, with DNA extracted from pectoral fin tissues and amplified for mtCR sequencing. Phylogenetic and haplotype network analyses revealed three main haplogroups with high genetic diversity (haplotype diversity: 0.993 ± 0.002), but minimal population differentiation (Fst = 0.00029, p = 0.39188), indicating significant gene flow, facilitated by coastal currents as these populations maintain strong genetic connectivity with the coastal populations of southern China. Neutrality tests, mismatch distribution and Bayesian Skyline Plots have suggested a historical population expansion followed by recent stability and slight decline. These findings highlight the species' resilience, but underscore the need for regionally coordinated conservation strategies to protect critical habitats like estuaries and mangroves, ensuring the sustainability of populations in Vietnam.

摘要

黄鳍鲷是越南一种具有重要商业价值的海洋鱼类,面临着过度捕捞和栖息地退化的威胁,为了有效保护该物种,需要对其遗传结构和进化历史有更深入的了解。本研究利用线粒体控制区(mtCR)序列和多变量分析,调查了越南中部三个种群的黄鳍鲷的遗传多样性、种群结构和种群历史。在2023年1月至2024年6月期间共采集了125个鱼类样本,从胸鳍组织中提取DNA并扩增用于mtCR测序。系统发育和单倍型网络分析揭示了三个主要单倍群,其具有高遗传多样性(单倍型多样性:0.993±0.002),但种群分化极小(Fst = 0.00029,p = 0.39188),表明存在显著的基因流,这是由沿海洋流促成的,因为这些种群与中国南部沿海种群保持着很强的遗传连通性。中性检验、错配分布和贝叶斯天际线图表明,历史上种群曾扩张,随后近期趋于稳定并略有下降。这些发现凸显了该物种的恢复力,但也强调需要制定区域协调的保护策略,以保护河口和红树林等关键栖息地,确保越南黄鳍鲷种群的可持续性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/accc/12397771/f3de9de9ddeb/bdj-13-e164274-g001.jpg

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