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单簧管/CLA-1长亚型重复区域的序列分析与建模

Sequence Analysis and Modeling of the Repetitive Region of the Long Isoform of Clarinet/CLA-1.

作者信息

Hunt Benjamin, Hunt Timothy, Xuan Zhao

机构信息

School of Biology and Ecology, University of Maine, Orono, Maine, United States.

出版信息

MicroPubl Biol. 2025 Aug 19;2025. doi: 10.17912/micropub.biology.001712. eCollection 2025.

DOI:10.17912/micropub.biology.001712
PMID:40904609
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12402934/
Abstract

The active zone gene encodes three main isoforms. The long isoform, CLA-1 L, functions beyond regulating synaptic vesicle exocytosis, including synaptic vesicle clustering and endocytic sorting of a transmembrane autophagy protein. CLA-1 L contains a large N-terminal repetitive region. Sequence analysis indicates that this region is enriched with acidic residues and displays disordered structures interspersed with helical sections. While modeling a portion of the repetitive region revealed dynamic transitions between compact and less compact conformations, modeling the entire region suggests a predominantly extended structure. This study sheds light on how CLA-1 L carries out its diverse functions.

摘要

活性区基因编码三种主要的异构体。长异构体CLA-1 L的功能不仅限于调节突触小泡胞吐作用,还包括突触小泡聚集和一种跨膜自噬蛋白的内吞分选。CLA-1 L含有一个大的N端重复区域。序列分析表明,该区域富含酸性残基,并呈现出无序结构,其间穿插着螺旋片段。虽然对重复区域的一部分进行建模揭示了紧密和较不紧密构象之间的动态转变,但对整个区域进行建模则表明其主要为伸展结构。这项研究揭示了CLA-1 L是如何执行其多种功能的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3bfa/12402934/5dd150a36b5c/25789430-2025-micropub.biology.001712.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3bfa/12402934/5dd150a36b5c/25789430-2025-micropub.biology.001712.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3bfa/12402934/5dd150a36b5c/25789430-2025-micropub.biology.001712.jpg

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