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新型昆虫病原细菌ALN 7.1和ALN 11.5的全基因组测序与生物合成基因簇分析

Whole-Genome Sequencing and Biosynthetic Gene Cluster Analysis of Novel Entomopathogenic Bacteria ALN 7.1 and ALN 11.5.

作者信息

Meesil Wipanee, Ardpairin Jiranun, Sharkey Liam K R, Pidot Sacha J, Vitta Apichat, Thanwisai Aunchalee

机构信息

Department of Microbiology and Parasitology, Faculty of Medical Science, Naresuan University, Phitsanulok 65000, Thailand.

Department of Microbiology and Immunology, Doherty Institute, 792 Elizabeth Street, Melbourne 3000, Australia.

出版信息

Biology (Basel). 2025 Jul 22;14(8):905. doi: 10.3390/biology14080905.

DOI:10.3390/biology14080905
PMID:40906110
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12383660/
Abstract

species are entomopathogenic bacteria that live in symbiosis with nematodes and produce a wide range of bioactive secondary metabolites. This study aimed to characterize the complete genomes and biosynthetic potential of two novel isolates, ALN7.1 and ALN11.5, recovered from collected in Northern Thailand. High-quality genome assemblies were generated, and phylogenomic comparisons confirmed that both isolates belonged to the recently described species . The assembled genomes were approximately 4.02 Mb in size, each comprising a single circular chromosome with a GC content of 44.6% and encoding ~3800 protein-coding sequences, consistent with the features observed in other members of the genus. Biosynthetic gene cluster (BGCs) prediction using antiSMASH identified 19 BGCs in ALN7.1 and 18 in ALN11.5, including known clusters for holomycin, pyrrolizixenamide, hydrogen cyanide, and gamexpeptide C, along with several uncharacterized clusters, suggesting unexplored metabolic potential. Comparative analyses highlighted conserved yet strain-specific BGC profiles, indicating possible diversification within the species. These results provide genomic insights into ALN7.1 and ALN11.5 and support their potential as valuable sources for the discovery of novel natural products and for future biotechnological applications.

摘要

某些物种是昆虫病原细菌,它们与线虫共生,并产生多种生物活性次生代谢产物。本研究旨在对从泰国北部采集的两种新分离株ALN7.1和ALN11.5的完整基因组和生物合成潜力进行表征。生成了高质量的基因组组装体,系统发育基因组比较证实这两种分离株都属于最近描述的物种。组装后的基因组大小约为4.02 Mb,每个基因组包含一条单一的环状染色体,GC含量为44.6%,编码约3800个蛋白质编码序列,这与该属其他成员观察到的特征一致。使用antiSMASH进行生物合成基因簇(BGC)预测,在ALN7.1中鉴定出19个BGC,在ALN11.5中鉴定出18个BGC,包括已知的全霉素、吡咯嗪酰胺、氰化氢和游戏肽C的基因簇,以及几个未表征的基因簇,这表明存在未开发的代谢潜力。比较分析突出了保守但菌株特异性的BGC图谱,表明该物种内可能存在多样化。这些结果提供了对ALN7.1和ALN11.5的基因组见解,并支持它们作为发现新型天然产物和未来生物技术应用的宝贵来源的潜力。

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本文引用的文献

1
antiSMASH 8.0: extended gene cluster detection capabilities and analyses of chemistry, enzymology, and regulation.抗SMASH 8.0:扩展的基因簇检测能力以及对化学、酶学和调控的分析
Nucleic Acids Res. 2025 Jul 7;53(W1):W32-W38. doi: 10.1093/nar/gkaf334.
2
Symbiotic bacteria associated with entomopathogenic nematodes showed molluscicidal activity against Biomphalaria glabrata, an intermediate host of Schistosoma mansoni.与昆虫病原线虫相关的共生细菌对曼氏血吸虫的中间宿主光滑双脐螺表现出杀螺活性。
Parasit Vectors. 2024 Dec 22;17(1):529. doi: 10.1186/s13071-024-06605-x.
3
Xenorhabdus bharatensis sp. nov., Xenorhabdus entomophaga sp. nov., Xenorhabdus siamensis sp. nov., and Xenorhabdus thailandensis sp. nov. Isolated from Steinernema Entomopathogenic Nematodes.
从感染斯氏线虫的昆虫病原线虫中分离到的巴氏 Xenorhabdus 亚种、新型 Xenorhabdus entomophaga、新型 Xenorhabdus siamensis 和新型 Xenorhabdus thailandensis。
Curr Microbiol. 2024 Nov 25;82(1):10. doi: 10.1007/s00284-024-03972-7.
4
GCI: a continuity inspector for complete genome assembly.GCI:用于完整基因组组装的连续性检查器。
Bioinformatics. 2024 Nov 1;40(11). doi: 10.1093/bioinformatics/btae633.
5
Pyrrolizwilline, a Unique Bacterial Alkaloid Assembled by a Nonribosomal Peptide Synthetase and non-Enzymatic Dimerization.吡咯里嗪,一种由非核糖体肽合成酶和非酶二聚化组装而成的独特细菌生物碱。
Angew Chem Int Ed Engl. 2024 Dec 16;63(51):e202411258. doi: 10.1002/anie.202411258. Epub 2024 Nov 14.
6
The methylerythritol phosphate pathway as an oxidative stress sense and response system.甲基赤藓醇磷酸途径作为氧化应激感知和反应系统。
Nat Commun. 2024 Jun 21;15(1):5303. doi: 10.1038/s41467-024-49483-8.
7
Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation tool.交互式生命树 (iTOL) v6:系统发育树显示和注释工具的最新更新。
Nucleic Acids Res. 2024 Jul 5;52(W1):W78-W82. doi: 10.1093/nar/gkae268.
8
Genome Sequence Analysis of Native Strains Isolated from Entomopathogenic Nematodes in Argentina.阿根廷本土昆虫病原线虫分离株的基因组序列分析。
Toxins (Basel). 2024 Feb 17;16(2):108. doi: 10.3390/toxins16020108.
9
Genome sequences of key bacterial symbionts of entomopathogenic nematodes: DSM17905, DSM16337, DSM16522, DSM18168, and DSM17908.昆虫病原线虫关键细菌共生体的基因组序列:DSM17905、DSM16337、DSM16522、DSM18168和DSM17908。
Microbiol Resour Announc. 2023 Oct 19;12(10):e0054823. doi: 10.1128/MRA.00548-23. Epub 2023 Sep 15.
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Newly Discovered Mechanisms of Antibiotic Self-Resistance with Multiple Enzymes Acting at Different Locations and Stages.抗生素自身耐药性的新发现机制:多种酶在不同位置和阶段发挥作用
Antibiotics (Basel). 2022 Dec 26;12(1):35. doi: 10.3390/antibiotics12010035.