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一起与受污染医院洗衣物相关的菌血症暴发的基因组流行病学研究

Genomic epidemiology of a bacteraemia outbreak linked to contaminated hospital laundry.

作者信息

Bosica Serena, Janowicz Anna, Romualdi Teresa, Ferrara Mattia, Di Domenico Marco, Di Romualdo Roberta, Robbe Giovanna Alessia, Di Marzio Violeta, Di Marcantonio Lisa, Di Zacomo Silvia, Di Iorio Chiara, Stanziale Andrea, Garofolo Giuliano, Pomilio Francesco, Fazii Paolo

机构信息

Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise 'G. Caporale', Campo Boario 64100 Teramo, Italy.

Clinical Microbiology and Virology Unit, 'Spirito Santo' Hospital, Via Fonte Romana n. 8, 65124 Pescara, Italy.

出版信息

Microb Genom. 2025 Sep;11(9). doi: 10.1099/mgen.0.001487.

Abstract

This study investigated an increase in bacteraemia cases amongst hospitalized patients in Italy during the summer of 2023. To precisely characterize the outbreak, we performed extensive genomic investigation, including both short- and long-read sequencing technologies, combined with bioinformatics analysis. This genomic approach enabled us to identify the putative source of the outbreak and understand the transmission dynamics of this opportunistic pathogen within the hospital. Our investigation revealed a complex, polyclonal contamination pattern traced to contaminated hospital laundry. Whole-genome sequencing (WGS) analysis identified multiple sequence types (STs) in both clinical and environmental samples, with three predominant STs (ST-2184, ST-163 and ST-365) found in both. These STs, previously implicated in bloodstream infection (BSI) outbreaks, raise concerns about their potential as healthcare-associated pathogens. SNP-based phylogenetic analysis provided strong evidence linking human and environmental isolates, with close genetic relatedness observed between isolates from patients and those from laundered scrubs, transport trucks and bed linens. The study highlights the potential for laundry-mediated pathogen transmission in healthcare settings and underscores the importance of stringent laundry hygiene practices. Improved laundry procedures successfully resolved the bacteraemia outbreak. This study demonstrates the power of WGS-based methodologies for investigating and resolving outbreaks, informing targeted infection control measures and ultimately enhancing patient safety.

摘要

本研究调查了2023年夏季意大利住院患者中菌血症病例的增加情况。为了精确描述此次疫情,我们进行了广泛的基因组研究,包括短读长和长读长测序技术,并结合生物信息学分析。这种基因组方法使我们能够确定疫情的推定源头,并了解这种机会性病原体在医院内的传播动态。我们的调查揭示了一种复杂的多克隆污染模式,可追溯到受污染的医院洗衣房。全基因组测序(WGS)分析在临床和环境样本中均鉴定出多种序列类型(STs),其中三种主要的STs(ST-2184、ST-163和ST-365)在两者中均有发现。这些STs此前曾与血流感染(BSI)疫情有关,引发了人们对其作为医疗相关病原体潜力的担忧。基于单核苷酸多态性(SNP)的系统发育分析提供了有力证据,将人类和环境分离株联系起来,在患者分离株与来自洗涤后的手术服、运输卡车和床单的分离株之间观察到密切的遗传相关性。该研究强调了洗衣房介导的病原体在医疗环境中传播的可能性,并强调了严格的洗衣卫生措施的重要性。改进的洗衣程序成功解决了菌血症疫情。这项研究证明了基于WGS的方法在调查和解决疫情方面的强大作用,为有针对性的感染控制措施提供了依据,并最终提高了患者安全性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0482/12421256/66974e4275fe/mgen-11-01487-g001.jpg

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