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拟南芥晚期胚胎发生丰富蛋白响应物理化学环境变化的功能多样性

Functional diversity of Arabidopsis late embryogenesis abundant proteins in response to changes in the physicochemical environment.

作者信息

Palomino-Navarrete L D, Pérez-Villanueva D, Moses D, Gollub E, Nguyen K, Sanchez-Martinez S, Yu F, Martinez K, Boothby T C, Sukenik S, Cuevas-Velazquez C L

机构信息

Departamento de Bioquímica, Facultad de Química, Universidad Nacional Autónoma de México, CdMx, Mexico.

Department of Chemistry and Biochemistry, University of California, Merced, Merced, California, USA.

出版信息

bioRxiv. 2025 Aug 29:2025.08.26.672499. doi: 10.1101/2025.08.26.672499.

Abstract

Some desiccation-tolerant organisms accumulate intrinsically disordered proteins (IDPs), such as Late Embryogenesis Abundant (LEA) proteins, which help protect other proteins from inactivation and/or aggregation during desiccation. Like other IDPs, LEA proteins adopt ensembles of extended conformations that shift in response to environmental changes. Desiccation causes dramatic changes in the cellular environment, but it is unclear how the structural malleability of LEAs is related to their protective function. In this work, we measured the protective function and structural sensitivity to changes in the environment of four LEA proteins from different families. We found that all LEAs showed different protection efficiencies of the labile enzyme lactate dehydrogenase under desiccation . In line with this, we identified distinct ensemble structural changes when these LEA proteins were exposed to different physicochemical environments. Specifically, AtEM1, AtLEA7, and AtLEA4-5 showed compaction when the solution was crowded with polymers, whereas AtLEA6-2.2 showed larger structural changes when salt concentrations were increased. Furthermore, the ensembles of AtEM1, AtLEA7, and AtLEA4-5 gained helicity under desiccated conditions, while that of AtLEA6-2.2 remained largely disordered. Our results highlight how ensemble properties of LEA proteins contribute to their distinct functional activities . This work advances our understanding of the molecular features that contribute to functional diversity in desiccation-related IDPs.

摘要

一些耐干燥生物会积累内在无序蛋白(IDP),比如胚胎后期丰富蛋白(LEA),这类蛋白有助于保护其他蛋白在干燥过程中不被失活和/或聚集。与其他IDP一样,LEA蛋白呈现出一系列伸展构象,这些构象会随环境变化而改变。干燥会导致细胞环境发生巨大变化,但尚不清楚LEA蛋白的结构可塑性与其保护功能之间有何关联。在这项研究中,我们测定了来自不同家族的四种LEA蛋白对环境变化的保护功能和结构敏感性。我们发现,在干燥条件下,所有LEA蛋白对不稳定酶乳酸脱氢酶的保护效率各不相同。与此相符的是,当这些LEA蛋白暴露于不同的物理化学环境时,我们识别出了不同的整体结构变化。具体而言,当溶液中充满聚合物时,AtEM1、AtLEA7和AtLEA4 - 5会发生压缩,而当盐浓度增加时,AtLEA6 - 2.2会出现更大的结构变化。此外,在干燥条件下,AtEM1、AtLEA7和AtLEA4 - 5的整体结构获得了螺旋度,而AtLEA6 - 2.2的整体结构在很大程度上仍保持无序状态。我们的研究结果突出了LEA蛋白的整体特性如何促成其独特的功能活性。这项工作推进了我们对与干燥相关的IDP功能多样性分子特征的理解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a570/12407985/91077913c134/nihpp-2025.08.26.672499v1-f0001.jpg

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