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源自鱼类的丁酸梭菌LZK - 08:大口黑鲈的基因组洞察与益生菌评估

Fish-Derived Clostridium butyricum LZK-08: Genomic Insights and Probiotic Evaluation in Largemouth Bass.

作者信息

Liu Zhikun, Guo Jiaojiao, Su Qingyang, Feng Shikun, Zhang Xindang, Zhang Yanmin, Yang Guokun, Chang Xulu, Meng Xiaolin

机构信息

College of Fisheries, Henan Normal University, Xinxiang, 453007, PR China.

出版信息

Probiotics Antimicrob Proteins. 2025 Sep 5. doi: 10.1007/s12602-025-10721-0.

DOI:10.1007/s12602-025-10721-0
PMID:40911131
Abstract

Clostridium butyricum has gained attention as a probiotic in aquaculture due to its ability to improve growth, gut health, and immune function. However, most strains currently used are derived from non-aquatic sources, which may limit their colonization and efficacy in fish. In this study, a novel strain, C. butyricum LZK-08, was isolated from the intestine of grass carp. The strain was identified based on morphological features, 16S rRNA sequencing, and whole-genome analysis. Its probiotic properties were assessed through comprehensive in vitro assays and in vivo trials in largemouth bass. LZK-08 exhibited strong acid (pH 4.0), bile salt (0.3%), and heat (up to 80 °C) tolerance, along with high auto-aggregation (92.3%) and notable surface hydrophobicity. It produced digestive enzymes (amylase, protease, lipase) and short-chain fatty acids, particularly butyrate (523.32 μg/mL). Genomic analysis revealed a 4.71 Mb genome composed of a circular chromosome and plasmid, encoding 4,207 protein-coding genes. Key genes were enriched in carbohydrate and amino acid metabolism, stress response, and adhesion. Feeding trials in largemouth bass showed that dietary supplementation with LZK-08 significantly improved growth parameters, reduced feed conversion ratio, enhanced intestinal antioxidant enzyme and digestive enzyme activities. Histological analysis revealed improved intestinal morphology, including increased villus height and muscle thickness. 16S rRNA sequencing further showed that LZK-08 modulated gut microbiota by enriching beneficial taxa such as Lactobacillus and reducing potentially unfavorable Romboutsia. These findings indicate that C. butyricum LZK-08 is a physiologically robust, and genomically safe probiotic with strong functional attributes, demonstrating high potential for use in sustainable aquaculture.

摘要

丁酸梭菌因其具有促进生长、改善肠道健康和增强免疫功能的能力,已成为水产养殖中的一种益生菌并受到关注。然而,目前使用的大多数菌株都来源于非水生环境,这可能会限制它们在鱼类中的定殖和功效。在本研究中,从草鱼肠道中分离出了一种新型菌株——丁酸梭菌LZK-08。该菌株通过形态特征、16S rRNA测序和全基因组分析进行鉴定。通过在大口黑鲈上进行的全面体外试验和体内试验评估了其益生菌特性。LZK-08表现出对强酸(pH 4.0)、胆盐(0.3%)和高温(高达80°C)的强耐受性,以及高自凝性(92.3%)和显著的表面疏水性。它能产生消化酶(淀粉酶、蛋白酶、脂肪酶)和短链脂肪酸,尤其是丁酸(523.32μg/mL)。基因组分析显示,其基因组大小为4.71 Mb,由一条环状染色体和质粒组成,编码4207个蛋白质编码基因。关键基因在碳水化合物和氨基酸代谢、应激反应及黏附方面富集。大口黑鲈的投喂试验表明,在饲料中添加LZK-08可显著改善生长参数,降低饲料转化率,提高肠道抗氧化酶和消化酶活性。组织学分析显示肠道形态得到改善,包括绒毛高度增加和肌肉厚度增加。16S rRNA测序进一步表明,LZK-08通过富集有益菌属(如乳酸杆菌属)和减少潜在有害的罗姆布茨菌属来调节肠道微生物群。这些发现表明,丁酸梭菌LZK-08是一种生理性能强大、基因组安全且具有强大功能特性的益生菌,在可持续水产养殖中具有很高的应用潜力。

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本文引用的文献

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Effects of Dietary Supplementation with Three Different Probiotics on Growth Performance, Antioxidant Capacity, and Intestinal Microbiota in Grass Carp ().三种不同益生菌日粮添加对草鱼生长性能、抗氧化能力和肠道微生物群的影响()
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Gut microbiota-derived butyrate mediates the anticolitic effect of indigo supplementation through regulating CD4 T cell differentiation.
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Complete genome analysis of Bacillus velezensis HF-14,109 with potential for broad-spectrum antimicrobial activity and high enzyme-producing ability from common carp (Cyprinus carpio L.).对来自鲤鱼(Cyprinus carpio L.)的具有广谱抗菌活性和高酶产生能力潜力的贝莱斯芽孢杆菌HF-14,109进行全基因组分析。
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Effects of semaglutide on gut microbiota, cognitive function and inflammation in obese mice.司美格鲁肽对肥胖小鼠肠道菌群、认知功能和炎症的影响。
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Multiple effects of dietary supplementation with Lactobacillus reuteri and Bacillus subtilis on the growth, immunity, and metabolism of largemouth bass (Micropterus salmoides).饲用植物乳杆菌和枯草芽孢杆菌对大口黑鲈(Micropterus salmoides)生长、免疫和代谢的多重影响。
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