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400岁歌德棕(矮棕)的染色体水平组装

Chromosome-level assembly of the 400-year-old Goethe's Palm (Chamaerops humilis L.).

作者信息

Beltran-Sanz Núria, Prost Stefan, Malavasi Veronica, Moschin Silvia, Greve Carola, Schell Tilman, Morosinotto Tomas, Dal Grande Francesco

机构信息

Botanical Garden, University of Padua, Padua, Italy.

Ecology and Genetics Research Unit, University of Oulu, Oulu, Finland.

出版信息

Sci Data. 2025 Sep 10;12(1):1542. doi: 10.1038/s41597-025-05673-7.

Abstract

The rapid decline in global biodiversity highlights the urgent need for conservation efforts, with botanical gardens playing a crucial role in ex situ plant preservation. Monumental plants, such as the 400-year-old Goethe's Palm (Chamaerops humilis L.) at the Padua Botanical Garden serve as vital flagship species with significant ecological and cultural value. In this study, we present the first chromosome-level genome assembly of C. humilis, using PacBio HiFi and Arima Hi-C sequencing technologies. The assembled genome spans 4.41 Gbp with a scaffold N50 length of 195 Mbp and it includes 18 pseudo-chromosomes. Repetitive elements constituted approximately 88% of the genome, with Long Terminal Repeats (LTR) alone comprising 63%. A total of 28,321 protein-coding genes were predicted and annotated. The Goethe's Palm genome assembly is a valuable resource for exploring both its cultural and historical significance, as well as the genetic basis of adaptive traits that allow this palm to thrive in Mediterranean environments.

摘要

全球生物多样性的迅速下降凸显了保护工作的迫切需求,植物园在迁地植物保护中发挥着关键作用。一些具有重要意义的植物,如帕多瓦植物园里有400年历史的歌德棕榈(Chamaerops humilis L.),作为具有重大生态和文化价值的重要旗舰物种。在本研究中,我们利用PacBio HiFi和Arima Hi-C测序技术,展示了矮棕的首个染色体水平的基因组组装。组装后的基因组跨度为4.41 Gbp,支架N50长度为195 Mbp,包括18条假染色体。重复元件约占基因组的88%,仅长末端重复序列(LTR)就占63%。总共预测并注释了28,321个蛋白质编码基因。歌德棕榈的基因组组装是探索其文化和历史意义以及该棕榈在地中海环境中茁壮成长的适应性状遗传基础的宝贵资源。

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