Ignat'ev Vladislav, Dominiak Paulina Maria
Biological and Chemical Research Center, Faculty of Chemistry University of Warsaw Warsaw Poland.
J Appl Crystallogr. 2024 Nov 17;57(Pt 6):1884-1895. doi: 10.1107/S1600576724009841. eCollection 2024 Dec 1.
The MATTS (multipolar atom types from theory and statistical clustering) data bank is an advanced tool for crystal structure refinement and properties analysis. It applies a multipole model (MM), which describes the asphericity of the atomic electron density and helps to interpret X-ray or electron diffraction data better than approaches based on the spherical atoms approximation. The generation of MATTS data involves density functional theory calculations, and until recently we used the B3LYP/6-31G** level of theory for this stage. However, it was not so clear how the wavefunction level of theory, especially the basis set used, influenced the resulting MM. This study investigates the influence of the wavefunction basis set on the resulting MM from a charge density point of view. For this purpose, we used charge density related properties, such as correlation of electrostatic potentials, atomic electron populations and average electrostatic potential values. The complex analysis reveals that, within the framework of MATTS data generation, the size of the basis set used has the most significant impact on the MM's charge density quality, and switching from double- to triple-zeta basis sets helps notably improve the charge density related properties. This research sets the foundation for the creation of a new version of the MATTS data bank, which will be expanded to include atom types for elements heavier than Kr and selected metal complexes important for biological systems.
MATTS(基于理论和统计聚类的多极原子类型)数据库是用于晶体结构精修和性质分析的先进工具。它应用了一种多极模型(MM),该模型描述了原子电子密度的非球对称性,并且相较于基于球形原子近似的方法,有助于更好地解释X射线或电子衍射数据。MATTS数据的生成涉及密度泛函理论计算,直到最近我们在此阶段都使用B3LYP/6 - 31G**理论水平。然而,波函数理论水平,尤其是所使用的基组,如何影响最终的多极模型并不十分清楚。本研究从电荷密度的角度研究波函数基组对所得多极模型的影响。为此,我们使用了与电荷密度相关的性质,如静电势的相关性、原子电子布居和平均静电势值。复杂分析表明,在MATTS数据生成的框架内,所使用基组的大小对多极模型的电荷密度质量影响最为显著,从双ζ基组转换为三ζ基组有助于显著改善与电荷密度相关的性质。这项研究为创建新版本的MATTS数据库奠定了基础,新版本将进行扩展,纳入比氪重的元素的原子类型以及对生物系统重要的选定金属配合物。