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1
Some examples of the use of computer-produced contour plots in the fitting of enzyme rate equations to reaction-velocity measurements.计算机生成的等高线图在酶速率方程与反应速度测量拟合中的一些应用示例。
Biochem J. 1972 Dec;130(3):861-70. doi: 10.1042/bj1300861.
2
Kinetic studies on the two common inherited forms of human erythrocyte adenylate kinase.关于人类红细胞腺苷酸激酶两种常见遗传形式的动力学研究。
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3
Deviations from Michaelis-Menten kinetics. The possibility of complicated curves for simple kinetic schemes and the computer fitting of experimental data for acetylcholinesterase, acid phosphatase, adenosine deaminase, arylsulphatase, benzylamine oxidase, chymotrypsin, fumarase, galactose dehydrogenase, beta-galactosidase, lactate dehydrogenase, peroxidase and xanthine oxidase.与米氏动力学的偏差。简单动力学机制出现复杂曲线的可能性以及对乙酰胆碱酯酶、酸性磷酸酶、腺苷脱氨酶、芳基硫酸酯酶、苄胺氧化酶、胰凝乳蛋白酶、延胡索酸酶、半乳糖脱氢酶、β-半乳糖苷酶、乳酸脱氢酶、过氧化物酶和黄嘌呤氧化酶的实验数据进行计算机拟合。
Biochem J. 1980 Jun 1;187(3):739-65. doi: 10.1042/bj1870739.
4
An enzyme kinetics program for desk-top computers.一款适用于台式计算机的酶动力学程序。
Comput Biol Med. 1982;12(4):263-83. doi: 10.1016/0010-4825(82)90031-2.
5
Allosteric regulation of proton translocation by a vacuolar adenosinetriphosphatase.
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6
[Determination of enzyme kinetic parameters and differentiation between various mechanisms by means of a non-linear least squares method].[通过非线性最小二乘法测定酶动力学参数及区分不同机制]
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Half-time analysis of the integrated Michaelis equation. Simulation and use of the half-time plot and its direct linear variant in the analysis of some alpha-chymotrypsin, papain- and fumarase-catalysed reactions.米氏积分方程的半衰期分析。半衰期图及其直接线性变体在某些α-糜蛋白酶、木瓜蛋白酶和延胡索酸酶催化反应分析中的模拟与应用。
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8
Kinetic analysis of human deoxycytidine kinase with the true phosphate donor uridine triphosphate.使用真正的磷酸供体三磷酸尿苷对人脱氧胞苷激酶进行动力学分析。
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9
The comparison of the estimation of enzyme kinetic parameters by fitting reaction curve to the integrated Michaelis-Menten rate equations of different predictor variables.通过将反应曲线拟合到不同预测变量的积分米氏速率方程来比较酶动力学参数的估计。
J Biochem Biophys Methods. 2005 Jan 31;62(1):13-24. doi: 10.1016/j.jbbm.2004.06.010.
10
Fitting of enzyme kinetic data without prior knowledge of weights.在不预先了解权重的情况下对酶动力学数据进行拟合。
Biochem J. 1981 Mar 1;193(3):1005-8. doi: 10.1042/bj1931005.

引用本文的文献

1
Use of the F test for determining the degree of enzyme-kinetic and ligand-binding data. A Monte Carlo simulation study.使用F检验确定酶动力学和配体结合数据的程度。一项蒙特卡罗模拟研究。
Biochem J. 1983 Apr 1;211(1):23-34. doi: 10.1042/bj2110023.
2
Normalization in the fitting of data by iterative methods. Application to tracer kinetics and enzyme kinetics.迭代法拟合数据中的归一化。在示踪动力学和酶动力学中的应用。
Biochem J. 1973 Jul;134(3):729-36. doi: 10.1042/bj1340729.
3
Studies on the mechanism and kinetics of the 2-oxoglutarate dehydrogenase system from pig heart.猪心脏2-酮戊二酸脱氢酶系统的机制与动力学研究。
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本文引用的文献

1
Statistical estimations in enzyme kinetics.酶动力学中的统计估计
Biochem J. 1961 Aug;80(2):324-32. doi: 10.1042/bj0800324.
2
A computer program for the determination of kinetic parameters from sigmoidal steady-state kinetics.一种用于从S形稳态动力学确定动力学参数的计算机程序。
FEBS Lett. 1970 Jun 8;8(4):178-185. doi: 10.1016/0014-5793(70)80258-7.
3
Inhibition of pigeon liver NAD kinase by a non-phosphorylatible analogue of NAD.
FEBS Lett. 1971 Jul 1;15(4):277-280. doi: 10.1016/0014-5793(71)80637-3.
4
A computer program for fitting data to the Michaelis-Menten equation.一个用于将数据拟合到米氏方程的计算机程序。
Biochem Biophys Res Commun. 1967 Oct 26;29(2):194-7. doi: 10.1016/0006-291x(67)90586-4.
5
Rat liver pyruvate carboxylase. I. Preparation, properties, and cation specificity.大鼠肝脏丙酮酸羧化酶。I. 制备、性质及阳离子特异性。
J Biol Chem. 1971 Jun 10;246(11):3569-78.
6
Standard free energy maps for the hydrolysis of ATP as a function of pH, pMg and pCa.ATP水解的标准自由能图与pH、pMg和pCa的函数关系。
Arch Biochem Biophys. 1971 Nov;147(1):311-7. doi: 10.1016/0003-9861(71)90338-9.
7
A general strategy for parameter estimation from isosteric and allosteric-kinetic data and binding measurements.一种从等排体和变构动力学数据以及结合测量中进行参数估计的通用策略。
Eur J Biochem. 1972 Apr 11;26(3):368-79. doi: 10.1111/j.1432-1033.1972.tb01776.x.
8
The statistical analysis of enzyme kinetic data.酶动力学数据的统计分析。
Adv Enzymol Relat Areas Mol Biol. 1967;29:1-32. doi: 10.1002/9780470122747.ch1.
9
Effect of ionic strength, pH, amines and divalent cations on the lytic activity of T4 lysozyme.离子强度、pH值、胺类和二价阳离子对T4溶菌酶裂解活性的影响。
Eur J Biochem. 1972 Jun 23;28(1):116-22. doi: 10.1111/j.1432-1033.1972.tb01891.x.
10
Kinetic studies of pigeon liver NAD kinase.鸽肝NAD激酶的动力学研究
Eur J Biochem. 1968 Aug;5(3):444-50. doi: 10.1111/j.1432-1033.1968.tb00390.x.

计算机生成的等高线图在酶速率方程与反应速度测量拟合中的一些应用示例。

Some examples of the use of computer-produced contour plots in the fitting of enzyme rate equations to reaction-velocity measurements.

作者信息

Ottaway J H, Apps D K

出版信息

Biochem J. 1972 Dec;130(3):861-70. doi: 10.1042/bj1300861.

DOI:10.1042/bj1300861
PMID:4664937
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1174525/
Abstract

The use of computer-based isotach plots, relating reaction velocity to simultaneous variation of two substrates or effectors of an enzyme, in producing estimates of the parameters of enzyme rate equations was investigated. The computer program (;SYMAP') incorporates an interpolation algorithm, and the superiority of this over visual estimation in producing interpolated velocity values for the estimation of parameter values by conventional double-reciprocal plots is described. The usefulness of the SYMAP program in monitoring the process of fitting data obtained by simultaneous changes in two experimental variables is also described. It is shown that if the residual errors are weighted by a procedure described elsewhere (Ottaway, 1971b, 1973), the percentage error of the computed velocity is distributed evenly over a plot which contains a 100-fold variation in the concentration of one substrate and a 500-fold variation in the concentration of Mg(2+), and in which the velocity of the reaction (that catalysed by NAD kinase) varies over a 60-fold range. The two-dimensional percentage error plot was used to assess the limits within which an incomplete inhibition equation is valid, and to detect a discrepancy in an expected good fit, caused by an impurity in one of the substrates.

摘要

研究了使用基于计算机的等速线图,将反应速度与酶的两种底物或效应物的同时变化相关联,以估算酶速率方程的参数。计算机程序(SYMAP)包含一种插值算法,并描述了其相对于视觉估计在通过传统双倒数图估算参数值时生成插值速度值方面的优越性。还描述了SYMAP程序在监测由两个实验变量同时变化获得的数据拟合过程中的有用性。结果表明,如果按照其他地方描述的程序(奥塔韦,1971b,1973)对残差进行加权,计算速度的百分比误差会均匀分布在一个图上,该图中一种底物的浓度有100倍的变化,Mg(2+)的浓度有500倍的变化,并且反应(由NAD激酶催化)的速度在60倍的范围内变化。二维百分比误差图用于评估不完全抑制方程有效的范围,并检测由一种底物中的杂质导致的预期良好拟合中的差异。