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计算机生成的等高线图在酶速率方程与反应速度测量拟合中的一些应用示例。

Some examples of the use of computer-produced contour plots in the fitting of enzyme rate equations to reaction-velocity measurements.

作者信息

Ottaway J H, Apps D K

出版信息

Biochem J. 1972 Dec;130(3):861-70. doi: 10.1042/bj1300861.

Abstract

The use of computer-based isotach plots, relating reaction velocity to simultaneous variation of two substrates or effectors of an enzyme, in producing estimates of the parameters of enzyme rate equations was investigated. The computer program (;SYMAP') incorporates an interpolation algorithm, and the superiority of this over visual estimation in producing interpolated velocity values for the estimation of parameter values by conventional double-reciprocal plots is described. The usefulness of the SYMAP program in monitoring the process of fitting data obtained by simultaneous changes in two experimental variables is also described. It is shown that if the residual errors are weighted by a procedure described elsewhere (Ottaway, 1971b, 1973), the percentage error of the computed velocity is distributed evenly over a plot which contains a 100-fold variation in the concentration of one substrate and a 500-fold variation in the concentration of Mg(2+), and in which the velocity of the reaction (that catalysed by NAD kinase) varies over a 60-fold range. The two-dimensional percentage error plot was used to assess the limits within which an incomplete inhibition equation is valid, and to detect a discrepancy in an expected good fit, caused by an impurity in one of the substrates.

摘要

研究了使用基于计算机的等速线图,将反应速度与酶的两种底物或效应物的同时变化相关联,以估算酶速率方程的参数。计算机程序(SYMAP)包含一种插值算法,并描述了其相对于视觉估计在通过传统双倒数图估算参数值时生成插值速度值方面的优越性。还描述了SYMAP程序在监测由两个实验变量同时变化获得的数据拟合过程中的有用性。结果表明,如果按照其他地方描述的程序(奥塔韦,1971b,1973)对残差进行加权,计算速度的百分比误差会均匀分布在一个图上,该图中一种底物的浓度有100倍的变化,Mg(2+)的浓度有500倍的变化,并且反应(由NAD激酶催化)的速度在60倍的范围内变化。二维百分比误差图用于评估不完全抑制方程有效的范围,并检测由一种底物中的杂质导致的预期良好拟合中的差异。

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An enzyme kinetics program for desk-top computers.一款适用于台式计算机的酶动力学程序。
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本文引用的文献

1
Statistical estimations in enzyme kinetics.酶动力学中的统计估计
Biochem J. 1961 Aug;80(2):324-32. doi: 10.1042/bj0800324.
3
Inhibition of pigeon liver NAD kinase by a non-phosphorylatible analogue of NAD.
FEBS Lett. 1971 Jul 1;15(4):277-280. doi: 10.1016/0014-5793(71)80637-3.
4
8
The statistical analysis of enzyme kinetic data.酶动力学数据的统计分析。
Adv Enzymol Relat Areas Mol Biol. 1967;29:1-32. doi: 10.1002/9780470122747.ch1.
10
Kinetic studies of pigeon liver NAD kinase.鸽肝NAD激酶的动力学研究
Eur J Biochem. 1968 Aug;5(3):444-50. doi: 10.1111/j.1432-1033.1968.tb00390.x.

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