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通过脱氧核糖核酸-核糖核酸杂交对大肠杆菌中快速标记的核糖核酸进行表征

Characterization of rapidly labelled ribonucleic acid in Escherichia coli by deoxyribonucleic acid-ribonucleic acid hybridization.

作者信息

Pigott G H, Midgley J E

出版信息

Biochem J. 1968 Nov;110(2):251-63. doi: 10.1042/bj1100251.

DOI:10.1042/bj1100251
PMID:4881972
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1187205/
Abstract
  1. Rapidly labelled RNA from Escherichia coli K 12 was characterized by hybridization to denatured E. coli DNA on cellulose nitrate membrane filters. The experiments were designed to show that, if sufficient denatured DNA is offered in a single challenge, practically all the rapidly labelled RNA will hybridize. With the technique employed, 75-80% hybridization efficiency could be obtained as a maximum. Even if an excess of DNA sites were offered, this value could not be improved upon in any single challenge of rapidly labelled RNA with denatured E. coli DNA. 2. It was confirmed that the hybridization technique can separate the rapidly labelled RNA into two fractions. One of these (30% of the total) was efficiently hybridized with the low DNA/RNA ratio (10:1, w/w) used in tests. The other fraction (70% of the total) was hybridized to DNA at low efficiencies with the DNA/RNA ratio 10:1, and was hybridized progressively more effectively as the amount of denatured DNA was increased. A practical maximum of 80% hybridization of all the rapidly labelled RNA was first achieved at a DNA/RNA ratio 210:1 (+/-10:1). This fraction was fully representative of the rapidly labelled RNA with regard to kind and relative amount of materials hybridized. 3. In competition experiments, where additions were made of unlabelled RNA prepared from E. coli DNA, DNA-dependent RNA polymerase (EC 2.7.7.6) and nucleoside 5'-triphosphates, the rapidly labelled RNA fraction hybridized at a low (10:1) DNA/RNA ratio was shown to be competitive with a product from genes other than those responsible for ribosomal RNA synthesis and thus was presumably messenger RNA. At higher DNA/rapidly labelled RNA ratios (200:1), competition with added unlabelled E. coli ribosomal RNA (without messenger RNA contaminants) lowered the hybridization of the rapidly labelled RNA from its 80% maximum to 23%. This proportion of rapidly labelled RNA was not competitive with E. coli ribosomal RNA even when the latter was in large excess. The ribosomal RNA would also not compete with the 23% rapidly labelled RNA bound to DNA at low DNA/RNA ratios. It was thus demonstrated that the major part of E. coli rapidly labelled RNA (70%) is ribosomal RNA, presumably a precursor to the RNA in mature ribosomes. 4. These studies have shown that, when earlier workers used low DNA/RNA ratios (about 10:1) in the assay of messenger RNA in bacterial rapidly labelled RNA, a reasonable estimate of this fraction was achieved. Criticisms that individual messenger RNA species may be synthesized from single DNA sites in E. coli at rates that lead to low efficiencies of messenger RNA binding at low DNA/RNA ratios are refuted. In accordance with earlier results, estimations of the messenger RNA content of E. coli in both rapidly labelled and randomly labelled RNA show that this fraction is 1.8-1.9% of the total RNA. This shows that, if any messenger RNA of relatively long life exists in E. coli, it does not contribute a measurable weight to that of rapidly labelled messenger RNA.
摘要
  1. 通过在硝酸纤维素膜滤器上与变性大肠杆菌DNA杂交,对来自大肠杆菌K12的快速标记RNA进行了表征。这些实验旨在表明,如果在单次挑战中提供足够的变性DNA,几乎所有快速标记的RNA都将杂交。采用该技术,最大可获得75 - 80%的杂交效率。即使提供过量的DNA位点,在用变性大肠杆菌DNA对快速标记RNA进行的任何单次挑战中,该值也无法提高。2. 已证实杂交技术可将快速标记的RNA分为两个部分。其中一部分(占总量的30%)能与测试中使用的低DNA/RNA比率(10:1,w/w)有效杂交。另一部分(占总量的70%)在DNA/RNA比率为10:1时与DNA的杂交效率较低,并且随着变性DNA量的增加,杂交效果逐渐更有效。在DNA/RNA比率为210:1(±10:1)时,首次实现了所有快速标记RNA实际最大80%的杂交。就杂交物质的种类和相对量而言,这一部分完全代表了快速标记的RNA。3. 在竞争实验中,加入了由大肠杆菌DNA制备的未标记RNA、依赖DNA的RNA聚合酶(EC 2.7.7.6)和核苷5'-三磷酸,结果表明,在低(10:1)DNA/RNA比率下杂交的快速标记RNA部分与负责核糖体RNA合成以外的基因产物具有竞争性,因此推测为信使RNA。在较高的DNA/快速标记RNA比率(200:1)下,与添加的未标记大肠杆菌核糖体RNA(无信使RNA污染物)的竞争使快速标记RNA的杂交率从其最大80%降至23%。即使大肠杆菌核糖体RNA大量过量,这部分快速标记RNA也不与它竞争。核糖体RNA也不会与在低DNA/RNA比率下与DNA结合的23%快速标记RNA竞争。因此证明,大肠杆菌快速标记RNA的主要部分(70%)是核糖体RNA,大概是成熟核糖体中RNA的前体。4. 这些研究表明,早期研究人员在测定细菌快速标记RNA中的信使RNA时使用低DNA/RNA比率(约10:1),对这一部分进行了合理估计。关于个别信使RNA物种可能从大肠杆菌中的单个DNA位点以导致在低DNA/RNA比率下信使RNA结合效率低的速率合成的批评被驳斥。与早期结果一致,对快速标记和随机标记RNA中大肠杆菌信使RNA含量的估计表明,这一部分占总RNA的1.8 - 1.9%。这表明,如果大肠杆菌中存在任何寿命相对较长的信使RNA,它对快速标记信使RNA的重量没有可测量的贡献。

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本文引用的文献

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The Synthesis of Ribosomes in E. coli: I. The Incorporation of C-Uracil into the Metabolic Pool and RNA.大肠杆菌中核糖体的合成:I. 胞嘧啶-尿嘧啶掺入代谢库和RNA的过程
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Messenger RNA turnover and protein synthesis in B. subtilis inhibited by actinomycin D.枯草芽孢杆菌中受放线菌素D抑制的信使核糖核酸周转和蛋白质合成
Proc Natl Acad Sci U S A. 1962 Sep 15;48(9):1631-8. doi: 10.1073/pnas.48.9.1631.
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STUDIES OF ESCHERICHIA COLI RIBONUCLEIC ACID-DEOXYRIBONUCLEIC ACID COMPLEX.大肠杆菌核糖核酸-脱氧核糖核酸复合物的研究
Biochim Biophys Acta. 1965 May 11;103:60-9. doi: 10.1016/0005-2787(65)90541-1.
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ASYMMETRIC SYNTHESIS OF RNA IN VITRO: DEPENDENCE OF DNA CONTINUITY AND CONFORMATION.体外RNA的不对称合成:DNA连续性和构象的依赖性
Proc Natl Acad Sci U S A. 1964 Aug;52(2):486-93. doi: 10.1073/pnas.52.2.486.
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