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天然左旋Z-DNA的稳定与检测

Stabilization and detection of natural left-handed Z-DNA.

作者信息

Rich A, Nordheim A, Azorin F

机构信息

Department of Biology, Massachusetts Institute of Technology, Cambridge 02139.

出版信息

J Biomol Struct Dyn. 1983 Oct;1(1):1-19. doi: 10.1080/07391102.1983.10507424.

DOI:10.1080/07391102.1983.10507424
PMID:6101083
Abstract

Left-handed Z-DNA is favored by nucleotide sequences with alternating purines and pyrimidines. The structural basis of this preference is described, as well as the factors which stabilize Z-DNA. The most important biological factors stabilizing Z-DNA are negative supercoiling and Z-DNA binding proteins. Experiments are described which make it possible to determine the nucleotide sequences of segments which form Z-DNA through the use of specific antibodies. Parts of the plasmid pBR322 form Z-DNA upon negative supercoiling. Similarly, three segments of the SV40 simian tumor virus form Z-DNA. They are located in the transcriptional enhancer region and may function, together with Z-DNA binding proteins, in facilitating the attachment of RNA polymerase to the DNA in chromatin. This is the first specific example suggesting a role of Z-DNA in regulating transcription.

摘要

左手螺旋的Z-DNA受嘌呤和嘧啶交替排列的核苷酸序列的青睐。文中描述了这种偏好的结构基础以及稳定Z-DNA的因素。稳定Z-DNA的最重要生物学因素是负超螺旋和Z-DNA结合蛋白。文中还描述了一些实验,这些实验通过使用特异性抗体,能够确定形成Z-DNA的片段的核苷酸序列。质粒pBR322的部分区域在负超螺旋作用下形成Z-DNA。同样,猿猴病毒SV40的三个片段也形成Z-DNA。它们位于转录增强子区域,可能与Z-DNA结合蛋白一起,在促进RNA聚合酶与染色质中的DNA结合方面发挥作用。这是表明Z-DNA在调节转录中起作用的第一个具体例子。

相似文献

1
Stabilization and detection of natural left-handed Z-DNA.天然左旋Z-DNA的稳定与检测
J Biomol Struct Dyn. 1983 Oct;1(1):1-19. doi: 10.1080/07391102.1983.10507424.
2
Determination of the DNA conformation of the simian virus 40 (SV40) enhancer in SV40 minichromosomes.猿猴病毒40(SV40)微型染色体中SV40增强子DNA构象的测定。
Eur J Biochem. 1990 Mar 10;188(2):269-73. doi: 10.1111/j.1432-1033.1990.tb15399.x.
3
Negatively supercoiled simian virus 40 DNA contains Z-DNA segments within transcriptional enhancer sequences.负超螺旋猿猴病毒40 DNA在转录增强子序列中包含Z-DNA片段。
Nature. 1983;303(5919):674-9. doi: 10.1038/303674a0.
4
B-DNA to Z-DNA structural transitions in the SV40 enhancer: stabilization of Z-DNA in negatively supercoiled DNA minicircles.SV40增强子中B-DNA到Z-DNA的结构转变:负超螺旋DNA小环中Z-DNA的稳定化
Biochemistry. 1993 Mar 9;32(9):2167-76. doi: 10.1021/bi00060a007.
5
Z-DNA-binding proteins can act as potent effectors of gene expression in vivo.Z-DNA结合蛋白在体内可作为基因表达的强效效应物。
Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16666-71. doi: 10.1073/pnas.262672699. Epub 2002 Dec 16.
6
Interactions of anti-poly[d(G-br5C)] IgG with synthetic, viral and cellular Z DNAs.抗聚[d(G-br5C)]IgG与合成的、病毒的和细胞的Z-DNA的相互作用。
J Biomol Struct Dyn. 1984 Mar;1(5):1081-107. doi: 10.1080/07391102.1984.10507506.
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Left-handed Z-DNA.
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8
Isolation of Z-DNA binding proteins from SV40 minichromosomes: evidence for binding to the viral control region.从SV40微型染色体中分离Z-DNA结合蛋白:与病毒控制区结合的证据。
Cell. 1985 Jun;41(2):365-74. doi: 10.1016/s0092-8674(85)80009-x.
9
Immunoglobulin recognition of synthetic and natural left-handed Z DNA conformations and sequences.免疫球蛋白对合成及天然左手Z型DNA构象和序列的识别
J Mol Biol. 1984 Jul 5;176(3):369-415. doi: 10.1016/0022-2836(84)90495-9.
10
Intrinsic Z-DNA is stabilized by the conformational selection mechanism of Z-DNA-binding proteins.天然 Z-DNA 通过 Z-DNA 结合蛋白的构象选择机制稳定。
J Am Chem Soc. 2011 Feb 2;133(4):668-71. doi: 10.1021/ja107498y.

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Concordance of experimentally mapped or predicted Z-DNA sites with positions of selected alternating purine-pyrimidine tracts.实验绘制或预测的Z-DNA位点与所选交替嘌呤-嘧啶序列位置的一致性。
Nucleic Acids Res. 1985 Mar 11;13(5):1683-701. doi: 10.1093/nar/13.5.1683.
5
Site-specific cleavage of left-handed DNA in pBR322 by lambda-tris(diphenylphenanthroline)cobalt(III).λ-三(二苯基菲咯啉)钴(III)对pBR322中左手性DNA的位点特异性切割
Proc Natl Acad Sci U S A. 1985 Oct;82(19):6460-4. doi: 10.1073/pnas.82.19.6460.
6
Electron microscopy of SV40 DNA cross-linked by anti-Z DNA IgG.
EMBO J. 1985 Mar;4(3):837-44. doi: 10.1002/j.1460-2075.1985.tb03706.x.
7
Chemical detection of Z-DNA within the maize Adh1 promoter.玉米乙醇脱氢酶1(Adh1)启动子内Z-DNA的化学检测
Plant Mol Biol. 1992 Apr;18(6):1181-4. doi: 10.1007/BF00047722.