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编码鸡α1Ⅲ型胶原蛋白的基因组克隆的分离与鉴定

Isolation and characterization of a genomic clone encoding chick alpha 1 type III collagen.

作者信息

Yamada Y, Mudryj M, Sullivan M, de Crombrugghe B

出版信息

J Biol Chem. 1983 Mar 10;258(5):2758-61.

PMID:6298201
Abstract

We have isolated a cloned segment of the chick alpha 1 type III collagen gene from a genomic DNA library. This DNA clone was obtained by cross-hybridization with a cDNA clone containing sequences coding for a segment of the carboxy propeptide of chick alpha 1 type I collagen. This genomic clone was identified as coding for alpha 1 type III collagen by DNA sequence analysis of two segments of the gene and by its ability to hybridize to crop mRNA but not to calvaria mRNA in agreement with the presence of alpha 1 type III collagen in crop but not in calvaria. The deduced amino acid sequences reveal characteristic features for alpha 1 type III collagen and are in good agreement with the known protein sequences of calf and human alpha 1 type III collagen. The size of alpha 1 type III mRNA is about 6 kilobases, slightly larger than the mRNA for alpha 1 type I. R-loop electron microscopic analysis indicates that at least 16 exons are interspersed in a 9-kilobase DNA segment that contains the third distal part of the alpha 1 type III collagen gene.

摘要

我们从基因组DNA文库中分离出了鸡α1Ⅲ型胶原基因的一个克隆片段。该DNA克隆是通过与一个cDNA克隆进行交叉杂交获得的,该cDNA克隆包含编码鸡α1Ⅰ型胶原羧基前肽一段序列。通过对该基因的两个片段进行DNA序列分析,以及它与嗉囊mRNA杂交而不与颅骨mRNA杂交的能力(这与嗉囊中存在α1Ⅲ型胶原而颅骨中不存在相一致),确定该基因组克隆编码α1Ⅲ型胶原。推导的氨基酸序列揭示了α1Ⅲ型胶原的特征,并且与小牛和人α1Ⅲ型胶原的已知蛋白质序列高度一致。α1Ⅲ型mRNA的大小约为6千碱基,略大于α1Ⅰ型mRNA。R环电子显微镜分析表明,至少16个外显子散布在一个9千碱基的DNA片段中,该片段包含α1Ⅲ型胶原基因的第三个远端部分。

相似文献

1
Isolation and characterization of a genomic clone encoding chick alpha 1 type III collagen.编码鸡α1Ⅲ型胶原蛋白的基因组克隆的分离与鉴定
J Biol Chem. 1983 Mar 10;258(5):2758-61.
2
Isolation and characterization of genomic DNA coding for alpha 2 type I collagen.编码α2 I型胶原蛋白的基因组DNA的分离与特性分析。
Nucleic Acids Res. 1980 Apr 25;8(8):1823-37. doi: 10.1093/nar/8.8.1823.
3
Isolation and characterization of overlapping genomic clones covering the chicken alpha 2 (type I) collagen gene.覆盖鸡α2(I型)胶原蛋白基因的重叠基因组克隆的分离与鉴定。
Proc Natl Acad Sci U S A. 1980 Dec;77(12):7059-63. doi: 10.1073/pnas.77.12.7059.
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Isolation and characterization of a cDNA clone for the amino-terminal portion of the pro-alpha 1(II) chain of cartilage collagen.软骨胶原蛋白原α1(II)链氨基末端部分cDNA克隆的分离与鉴定
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Isolation and partial characterization of genomic clones coding for a human pro-alpha 1 (II) collagen chain and demonstration of restriction fragment length polymorphism at the 3' end of the gene.编码人原α1(II)胶原链的基因组克隆的分离及部分特性分析,以及该基因3'端限制性片段长度多态性的证明。
Biochemistry. 1985 Nov 5;24(23):6343-8. doi: 10.1021/bi00344a004.
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Isolation and characterization of a 15-kilobase genomic sequence coding for part of the Pro alpha 2 chain of sheep type I collagen.绵羊I型胶原蛋白α2链部分编码区15千碱基基因组序列的分离与鉴定
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Construction of DNA sequences complementary to rat alpha 1 and alpha 2 collagen mRNA and their use in studying the regulation of type I collagen synthesis by 1,25-dihydroxyvitamin D.与大鼠α1和α2胶原蛋白mRNA互补的DNA序列的构建及其在研究1,25-二羟基维生素D对I型胶原蛋白合成调控中的应用。
Biochemistry. 1984 Dec 4;23(25):6210-6. doi: 10.1021/bi00320a049.
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Isolation and characterization of genomic clones corresponding to the human type II procollagen gene.与人类II型前胶原基因对应的基因组克隆的分离与鉴定。
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A conserved nucleotide sequence, coding for a segment of the C-propeptide, is found at the same location in different collagen genes.在不同的胶原蛋白基因中,编码C-前肽片段的保守核苷酸序列位于相同位置。
Nucleic Acids Res. 1983 May 11;11(9):2733-44. doi: 10.1093/nar/11.9.2733.

引用本文的文献

1
The chick type III collagen gene contains two promoters that are preferentially expressed in different cell types and are separated by over 20 kb of DNA containing 23 exons.鸡的III型胶原蛋白基因包含两个启动子,它们在不同细胞类型中优先表达,且被一段超过20kb的含有23个外显子的DNA分隔开。
Nucleic Acids Res. 1997 Jun 15;25(12):2470-7. doi: 10.1093/nar/25.12.2470.
2
Expression of type I and III collagen genes during differentiation of embryonic chicken myoblasts in culture.培养的胚胎鸡成肌细胞分化过程中I型和III型胶原基因的表达
Mol Cell Biol. 1984 Aug;4(8):1483-92. doi: 10.1128/mcb.4.8.1483-1492.1984.
3
Tissue specificity of type I collagen gene expression is determined at both transcriptional and post-transcriptional levels.
I型胶原基因表达的组织特异性在转录和转录后水平上均被确定。
Mol Cell Biol. 1984 Sep;4(9):1843-52. doi: 10.1128/mcb.4.9.1843-1852.1984.
4
Isolation of cDNA and genomic DNA clones encoding type II collagen.编码II型胶原蛋白的cDNA和基因组DNA克隆的分离
Nucleic Acids Res. 1984 May 25;12(10):4207-28. doi: 10.1093/nar/12.10.4207.
5
Molecular cloning and carboxyl-propeptide analysis of human type III procollagen.人Ⅲ型前胶原的分子克隆及羧基前肽分析
Nucleic Acids Res. 1984 Dec 21;12(24):9383-94. doi: 10.1093/nar/12.24.9383.
6
Collagen gene construction and evolution.胶原蛋白基因的构建与进化。
J Mol Evol. 1985;22(2):141-9. doi: 10.1007/BF02101692.
7
Collagen genes and inherited connective tissue disease.胶原蛋白基因与遗传性结缔组织疾病
Biochem J. 1985 Jul 15;229(2):287-303. doi: 10.1042/bj2290287.
8
A distinct class of vertebrate collagen genes encodes chicken type IX collagen polypeptides.一类独特的脊椎动物胶原蛋白基因编码鸡IX型胶原蛋白多肽。
Proc Natl Acad Sci U S A. 1985 Jun;82(12):4050-4. doi: 10.1073/pnas.82.12.4050.
9
Structure and developmentally regulated expression of a Strongylocentrotus purpuratus collagen gene.紫海胆胶原蛋白基因的结构及发育调控表达
Proc Natl Acad Sci U S A. 1986 May;83(10):3351-5. doi: 10.1073/pnas.83.10.3351.
10
Structural analysis of a rat liver glutathione S-transferase Ya gene.大鼠肝脏谷胱甘肽S-转移酶Ya基因的结构分析
Proc Natl Acad Sci U S A. 1986 Dec;83(24):9393-7. doi: 10.1073/pnas.83.24.9393.