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1
Investigation of the catalytic site of actinidin by using benzofuroxan as a reactivity probe with selectivity for the thiolate-imidazolium ion-pair systems of cysteine proteinases. Evidence that the reaction of the ion-pair of actinidin (pKI 3.0, pKII 9.6) is modulated by the state of ionization of a group associated with a molecular pKa of 5.5.以苯并呋咱为反应性探针研究猕猴桃蛋白酶的催化位点,该探针可选择性作用于半胱氨酸蛋白酶的硫醇盐-咪唑鎓离子对体系。有证据表明,猕猴桃蛋白酶(pKI 3.0,pKII 9.6)离子对的反应受一个与分子pKa为5.5的基团的电离状态调节。
Biochem J. 1983 Sep 1;213(3):713-8. doi: 10.1042/bj2130713.
2
Chemical evidence for the pH-dependent control of ion-pair geometry in cathepsin B. Benzofuroxan as a reactivity probe sensitive to differences in the mutual disposition of the thiolate and imidazolium components of cysteine proteinase catalytic sites.组织蛋白酶B中离子对几何结构pH依赖性控制的化学证据。苯并呋咱作为一种对半胱氨酸蛋白酶催化位点硫醇盐和咪唑𬭩组分相互位置差异敏感的反应性探针。
Biochem J. 1986 Aug 15;238(1):103-7. doi: 10.1042/bj2380103.
3
Benzofuroxan as a thiol-specific reactivity probe. Kinetics of its reactions with papain, ficin, bromelain and low-molecular-weight thiols.苯并呋咱作为一种硫醇特异性反应探针。其与木瓜蛋白酶、无花果蛋白酶、菠萝蛋白酶及低分子量硫醇反应的动力学。
Biochem J. 1977 Dec 1;167(3):799-810. doi: 10.1042/bj1670799.
4
Evaluation of benzofuroxan as a chromophoric oxidizing agent for thiol groups by using its reactions with papain, ficin, bromelain and low-molecular-weight thiols.通过苯并呋咱与木瓜蛋白酶、无花果蛋白酶、菠萝蛋白酶及低分子量硫醇的反应来评估其作为硫醇基团发色氧化剂的性能。
Biochem J. 1977 Mar 1;161(3):627-37. doi: 10.1042/bj1610627.
5
A general framework of cysteine-proteinase mechanism deduced from studies on enzymes with structurally different analogous catalytic-site residues Asp-158 and -161 (papain and actinidin), Gly-196 (cathepsin B) and Asn-165 (cathepsin H). Kinetic studies up to pH 8 of the hydrolysis of N-alpha-benzyloxycarbonyl-L-arginyl-L-arginine 2-naphthylamide catalysed by cathepsin B and of L-arginine 2-naphthylamide catalysed by cathepsin H.通过对具有结构不同的类似催化位点残基(天冬氨酸-158和-161,木瓜蛋白酶和猕猴桃蛋白酶)、甘氨酸-196(组织蛋白酶B)和天冬酰胺-165(组织蛋白酶H)的酶的研究推导得出的半胱氨酸蛋白酶机制的一般框架。对组织蛋白酶B催化的N-α-苄氧羰基-L-精氨酰-L-精氨酸2-萘酰胺水解以及组织蛋白酶H催化的L-精氨酸2-萘酰胺水解在pH 8以下进行的动力学研究。
Biochem J. 1985 Apr 15;227(2):521-8. doi: 10.1042/bj2270521.
6
Supracrystallographic resolution of interactions contributing to enzyme catalysis by use of natural structural variants and reactivity-probe kinetics.利用天然结构变异体和反应性探针动力学对有助于酶催化的相互作用进行超晶体学分辨率研究。
Biochem J. 1988 Dec 1;256(2):543-58. doi: 10.1042/bj2560543.
7
Structure-function relationships in the cysteine proteinases actinidin, papain and papaya proteinase omega. Three-dimensional structure of papaya proteinase omega deduced by knowledge-based modelling and active-centre characteristics determined by two-hydronic-state reactivity probe kinetics and kinetics of catalysis.半胱氨酸蛋白酶肌动蛋白水解酶、木瓜蛋白酶和木瓜蛋白酶ω的结构-功能关系。通过基于知识的建模推导木瓜蛋白酶ω的三维结构,以及通过双水合态反应探针动力学和催化动力学确定其活性中心特征。
Biochem J. 1991 Nov 15;280 ( Pt 1)(Pt 1):79-92. doi: 10.1042/bj2800079.
8
Differences in the chemical and catalytic characteristics of two crystallographically 'identical' enzyme catalytic sites. Characterization of actinidin and papain by a combination of pH-dependent substrate catalysis kinetics and reactivity probe studies targeted on the catalytic-site thiol group and its immediate microenvironment.两个晶体学上“相同”的酶催化位点在化学和催化特性上的差异。通过结合pH依赖性底物催化动力学以及针对催化位点硫醇基团及其紧邻微环境的反应性探针研究,对猕猴桃蛋白酶和木瓜蛋白酶进行表征。
Biochem J. 1987 Oct 1;247(1):181-93. doi: 10.1042/bj2470181.
9
Chymopapain A. Purification and investigation by covalent chromatography and characterization by two-protonic-state reactivity-probe kinetics, steady-state kinetics and resonance Raman spectroscopy of some dithioacyl derivatives.木瓜凝乳蛋白酶A。通过共价色谱法进行纯化及研究,并利用双质子态反应探针动力学、稳态动力学以及某些二硫代酰基衍生物的共振拉曼光谱进行表征。
Biochem J. 1986 Jan 1;233(1):119-29. doi: 10.1042/bj2330119.
10
A marked gradation in active-centre properties in the cysteine proteinases revealed by neutral and anionic reactivity probes. Reactivity characteristics of the thiol groups of actinidin, ficin, papain and papaya peptidase A towards 4,4'-dipyridyl disulphide and 5,5'-dithiobis-(2-nitrobenzoate) dianion.通过中性和阴离子反应性探针揭示的半胱氨酸蛋白酶活性中心性质的显著分级。肌动蛋白水解酶、无花果蛋白酶、木瓜蛋白酶和木瓜蛋白酶A的巯基对4,4'-二吡啶二硫化物和5,5'-二硫代双-(2-硝基苯甲酸)二阴离子的反应特性。
Biochem J. 1983 Mar 1;209(3):873-9. doi: 10.1042/bj2090873.

引用本文的文献

1
Comparative resonance Raman spectroscopic and kinetic studies of acyl-enzymes involving papain, actinidin and papaya peptidase II.涉及木瓜蛋白酶、猕猴桃蛋白酶和木瓜蛋白酶II的酰基酶的比较共振拉曼光谱和动力学研究。
Biochem J. 1984 Nov 1;223(3):649-57. doi: 10.1042/bj2230649.
2
Differences between the electric fields of the catalytic sites of papain and actinidin detected by using the thiol-located nitrobenzofurazan label as a spectroscopic reporter group.使用巯基定位的硝基苯并呋喃标记作为光谱报告基团检测木瓜蛋白酶和猕猴桃蛋白酶催化位点电场之间的差异。
Biochem J. 1984 Jun 1;220(2):609-12. doi: 10.1042/bj2200609.
3
Preparation of cathepsins B and H by covalent chromatography and characterization of their catalytic sites by reaction with a thiol-specific two-protonic-state reactivity probe. Kinetic study of cathepsins B and H extending into alkaline media and a rapid spectroscopic titration of cathepsin H at pH 3-4.通过共价色谱法制备组织蛋白酶B和H,并通过与硫醇特异性双质子态反应性探针反应来表征其催化位点。对组织蛋白酶B和H在碱性介质中的动力学研究以及在pH 3-4条件下对组织蛋白酶H的快速光谱滴定。
Biochem J. 1985 Apr 15;227(2):511-9. doi: 10.1042/bj2270511.
4
A general framework of cysteine-proteinase mechanism deduced from studies on enzymes with structurally different analogous catalytic-site residues Asp-158 and -161 (papain and actinidin), Gly-196 (cathepsin B) and Asn-165 (cathepsin H). Kinetic studies up to pH 8 of the hydrolysis of N-alpha-benzyloxycarbonyl-L-arginyl-L-arginine 2-naphthylamide catalysed by cathepsin B and of L-arginine 2-naphthylamide catalysed by cathepsin H.通过对具有结构不同的类似催化位点残基(天冬氨酸-158和-161,木瓜蛋白酶和猕猴桃蛋白酶)、甘氨酸-196(组织蛋白酶B)和天冬酰胺-165(组织蛋白酶H)的酶的研究推导得出的半胱氨酸蛋白酶机制的一般框架。对组织蛋白酶B催化的N-α-苄氧羰基-L-精氨酰-L-精氨酸2-萘酰胺水解以及组织蛋白酶H催化的L-精氨酸2-萘酰胺水解在pH 8以下进行的动力学研究。
Biochem J. 1985 Apr 15;227(2):521-8. doi: 10.1042/bj2270521.
5
Chemical evidence for the pH-dependent control of ion-pair geometry in cathepsin B. Benzofuroxan as a reactivity probe sensitive to differences in the mutual disposition of the thiolate and imidazolium components of cysteine proteinase catalytic sites.组织蛋白酶B中离子对几何结构pH依赖性控制的化学证据。苯并呋咱作为一种对半胱氨酸蛋白酶催化位点硫醇盐和咪唑𬭩组分相互位置差异敏感的反应性探针。
Biochem J. 1986 Aug 15;238(1):103-7. doi: 10.1042/bj2380103.
6
Chymopapain A. Purification and investigation by covalent chromatography and characterization by two-protonic-state reactivity-probe kinetics, steady-state kinetics and resonance Raman spectroscopy of some dithioacyl derivatives.木瓜凝乳蛋白酶A。通过共价色谱法进行纯化及研究,并利用双质子态反应探针动力学、稳态动力学以及某些二硫代酰基衍生物的共振拉曼光谱进行表征。
Biochem J. 1986 Jan 1;233(1):119-29. doi: 10.1042/bj2330119.
7
Supracrystallographic resolution of interactions contributing to enzyme catalysis by use of natural structural variants and reactivity-probe kinetics.利用天然结构变异体和反应性探针动力学对有助于酶催化的相互作用进行超晶体学分辨率研究。
Biochem J. 1988 Dec 1;256(2):543-58. doi: 10.1042/bj2560543.
8
Differences in the chemical and catalytic characteristics of two crystallographically 'identical' enzyme catalytic sites. Characterization of actinidin and papain by a combination of pH-dependent substrate catalysis kinetics and reactivity probe studies targeted on the catalytic-site thiol group and its immediate microenvironment.两个晶体学上“相同”的酶催化位点在化学和催化特性上的差异。通过结合pH依赖性底物催化动力学以及针对催化位点硫醇基团及其紧邻微环境的反应性探针研究,对猕猴桃蛋白酶和木瓜蛋白酶进行表征。
Biochem J. 1987 Oct 1;247(1):181-93. doi: 10.1042/bj2470181.
9
The interplay of electrostatic fields and binding interactions determining catalytic-site reactivity in actinidin. A possible origin of differences in the behaviour of actinidin and papain.静电场与结合相互作用的相互影响决定了猕猴桃蛋白酶催化位点的反应活性。猕猴桃蛋白酶和木瓜蛋白酶行为差异的一个可能来源。
Biochem J. 1989 Apr 15;259(2):443-52. doi: 10.1042/bj2590443.

本文引用的文献

1
Structure of actinidin, after refinement at 1.7 A resolution.经1.7埃分辨率精修后的猕猴桃蛋白酶结构。
J Mol Biol. 1980 Aug 25;141(4):441-84. doi: 10.1016/0022-2836(80)90255-7.
2
Current problems in mechanistic studies of serine and cysteine proteinases.丝氨酸蛋白酶和半胱氨酸蛋白酶机制研究中的当前问题。
Biochem J. 1982 Oct 1;207(1):1-10. doi: 10.1042/bj2070001.
3
A marked gradation in active-centre properties in the cysteine proteinases revealed by neutral and anionic reactivity probes. Reactivity characteristics of the thiol groups of actinidin, ficin, papain and papaya peptidase A towards 4,4'-dipyridyl disulphide and 5,5'-dithiobis-(2-nitrobenzoate) dianion.通过中性和阴离子反应性探针揭示的半胱氨酸蛋白酶活性中心性质的显著分级。肌动蛋白水解酶、无花果蛋白酶、木瓜蛋白酶和木瓜蛋白酶A的巯基对4,4'-二吡啶二硫化物和5,5'-二硫代双-(2-硝基苯甲酸)二阴离子的反应特性。
Biochem J. 1983 Mar 1;209(3):873-9. doi: 10.1042/bj2090873.
4
Effects of conformational selectivity and of overlapping kinetically influential ionizations on the characteristics of pH-dependent enzyme kinetics. Implications of free-enzyme pKa variability in reactions of papain for its catalytic mechanism.构象选择性和重叠动力学影响电离对pH依赖性酶动力学特征的影响。木瓜蛋白酶反应中游离酶pKa变异性对其催化机制的影响。
Biochem J. 1983 Jun 1;211(3):701-8. doi: 10.1042/bj2110701.
5
Structure of papain.木瓜蛋白酶的结构。
Nature. 1968 Jun 8;218(5145):929-32. doi: 10.1038/218929a0.
6
Binding of chloromethyl ketone substrate analogues to crystalline papain.氯甲基酮底物类似物与结晶木瓜蛋白酶的结合。
Biochemistry. 1976 Aug 24;15(17):3731-8. doi: 10.1021/bi00662a014.
7
Evaluation of benzofuroxan as a chromophoric oxidizing agent for thiol groups by using its reactions with papain, ficin, bromelain and low-molecular-weight thiols.通过苯并呋咱与木瓜蛋白酶、无花果蛋白酶、菠萝蛋白酶及低分子量硫醇的反应来评估其作为硫醇基团发色氧化剂的性能。
Biochem J. 1977 Mar 1;161(3):627-37. doi: 10.1042/bj1610627.
8
A necessary modification to the preparation of papain from any high-quality latex of Carica papaya and evidence for the structural integrity of the enzyme produced by traditional methods.对从任何优质番木瓜乳胶制备木瓜蛋白酶的必要改进以及传统方法生产的酶结构完整性的证据。
Biochem J. 1979 Feb 1;177(2):541-8. doi: 10.1042/bj1770541.
9
Benzofuroxan as a thiol-specific reactivity probe. Kinetics of its reactions with papain, ficin, bromelain and low-molecular-weight thiols.苯并呋咱作为一种硫醇特异性反应探针。其与木瓜蛋白酶、无花果蛋白酶、菠萝蛋白酶及低分子量硫醇反应的动力学。
Biochem J. 1977 Dec 1;167(3):799-810. doi: 10.1042/bj1670799.
10
Preparation of fully active ficin from Ficus glabrata by covalent chromatography and characterization of its active centre by using 2,2'-depyridyl disulphide as a reactivity probe.通过共价色谱法从光滑榕中制备完全活性的无花果蛋白酶,并使用2,2'-二吡啶基二硫化物作为反应性探针表征其活性中心。
Biochem J. 1976 Nov;159(2):221-34. doi: 10.1042/bj1590221.

以苯并呋咱为反应性探针研究猕猴桃蛋白酶的催化位点,该探针可选择性作用于半胱氨酸蛋白酶的硫醇盐-咪唑鎓离子对体系。有证据表明,猕猴桃蛋白酶(pKI 3.0,pKII 9.6)离子对的反应受一个与分子pKa为5.5的基团的电离状态调节。

Investigation of the catalytic site of actinidin by using benzofuroxan as a reactivity probe with selectivity for the thiolate-imidazolium ion-pair systems of cysteine proteinases. Evidence that the reaction of the ion-pair of actinidin (pKI 3.0, pKII 9.6) is modulated by the state of ionization of a group associated with a molecular pKa of 5.5.

作者信息

Salih E, Brocklehurst K

出版信息

Biochem J. 1983 Sep 1;213(3):713-8. doi: 10.1042/bj2130713.

DOI:10.1042/bj2130713
PMID:6311173
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1152187/
Abstract

Benzofuroxan reacts with the catalytic-site thiol group of actinidin (EC 3.4.22.14, the cysteine proteinase from Actinidia chinensis) to produce stoicheiometric amounts of the chromophoric reduction product, o-benzoquinone dioxime, and of a catalytically inactive derivative of actinidin that is devoid of thiol and that is assumed to contain, initially at least, the sulphenic acid of cysteine-25. A similar result applies also to papain (EC 3.4.22.2). The rate of o-benzoquinone dioxime formation is neither increased by inclusion of 2-mercaptoethanol or hydroxylamine in the reaction mixture nor decreased by changing the solvent from H2O to 2H2O. The change of solvent was shown to be without effect also on the rate of reaction of benzofuroxan with papain. These results suggest that the reactions of benzofuroxan with both actinidin and papain involve rate-determining attack of the catalytic-site thiol group to produce an intermediate adduct that then reacts rapidly with water to form enzyme sulphenic acid and o-benzoquinone dioxime. The pH-dependence of the second-order rate constant for the reaction of benzofuroxan with actinidin was determined in the pH range 4.3-10.2. In marked contrast with the analogous reaction of papain (reported by Shipton & Brocklehurst [(1977) Biochem. J. 167, 799-810] ) the pH-k profile for the actinidin reaction clearly contains a sigmoidal component with pKa 5.5, in which k increases with decreasing pH. These data together with the molecular pKa values for S-/ImH+ ion-pair formation and decomposition (3.0 and 9.6) suggest that the combined nucleophilic-electrophilic reactivity of the ion-pair of actinidin might be controlled by the state of ionization of another ionizing group, associated with the molecular pKa of 5.5. The pH-dependence of k for the reaction of actinidin with benzofuroxan at 25 degrees C at I 0.1 in aqueous buffers containing 6.7% (v/v) ethanol is probably adequately described by: k = k1/(1 + [H+]/KI + KII/[H+]) + k2/(1 + [H+]/KII + KIII/ [H+] + k3/(1 + [H+]/KIII) in which kI = 2.55 M -1 X s -1, k2 = 1.35 M -1, k3 = 0.93 M -1 X s -1, pKI = 3.0, pKII = 5.5 and pKIII = 9.6. By contrast, the analogous reaction of papain may be described by the same equation but with kI = 0, k2 = 2.2 M -1 X s -1, k3 = 1.3 M -1 X s -1, pKII = 3.6 and pKIII = 9.0.

摘要

苯并呋咱与猕猴桃蛋白酶(EC 3.4.22.14,中华猕猴桃中的半胱氨酸蛋白酶)的催化位点巯基反应,生成化学计量的发色还原产物邻苯醌二肟,以及一种猕猴桃蛋白酶的催化无活性衍生物,该衍生物不含巯基,并且假定最初至少含有半胱氨酸-25的亚磺酸。类似的结果也适用于木瓜蛋白酶(EC 3.4.22.2)。反应混合物中加入2-巯基乙醇或羟胺不会增加邻苯醌二肟的生成速率,将溶剂从H₂O换成²H₂O也不会降低其生成速率。已证明溶剂的变化对苯并呋咱与木瓜蛋白酶的反应速率也没有影响。这些结果表明,苯并呋咱与猕猴桃蛋白酶和木瓜蛋白酶的反应都涉及催化位点巯基的速率决定进攻,以产生中间加合物,然后该加合物与水迅速反应形成酶亚磺酸和邻苯醌二肟。在4.3 - 10.2的pH范围内测定了苯并呋咱与猕猴桃蛋白酶反应的二级速率常数的pH依赖性。与木瓜蛋白酶的类似反应(由希普顿和布罗克赫斯特[(1977年)《生物化学杂志》167卷,799 - 810页]报道)形成鲜明对比的是,猕猴桃蛋白酶反应的pH - k曲线明显包含一个pKa为5.5的S形成分,其中k随着pH降低而增加。这些数据以及S⁻/ImH⁺离子对形成和分解的分子pKa值(3.0和9.6)表明,猕猴桃蛋白酶离子对的亲核 - 亲电组合反应性可能受另一个电离基团的电离状态控制,该电离基团与5.5的分子pKa相关。在25℃、离子强度I为0.1、含有6.7%(v/v)乙醇的水性缓冲液中,猕猴桃蛋白酶与苯并呋咱反应的k的pH依赖性可能由以下方程充分描述:k = k₁/(1 + [H⁺]/K₁ + K₂/[H⁺]) + k₂/(1 + [H⁺]/K₂ + K₃/[H⁺]) + k₃/(1 + [H⁺]/K₃),其中k₁ = 2.55 M⁻¹·s⁻¹,k₂ = 1.35 M⁻¹,k₃ = 0.93 M⁻¹·s⁻¹,pK₁ = 3.0,pK₂ = 5.5,pK₃ = 9.6。相比之下,木瓜蛋白酶的类似反应可以用相同的方程描述,但k₁ = 0,k₂ = 2.2 M⁻¹·s⁻¹,k₃ = 1.3 M⁻¹·s⁻¹,pK₂ = 3.6,pK₃ = 9.0。