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非洲爪蟾核糖体染色质的紧密结构

Compact structure of ribosomal chromatin in Xenopus laevis.

作者信息

Spadafora C, Crippa M

出版信息

Nucleic Acids Res. 1984 Mar 26;12(6):2691-704. doi: 10.1093/nar/12.6.2691.

DOI:10.1093/nar/12.6.2691
PMID:6709502
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC318699/
Abstract

Micrococcal nuclease digestion was used as a tool to study the organization of the ribosomal chromatin in liver, blood and embryo cells of X. laevis. It was found that in liver and blood cells, ribosomal DNA is efficiently protected from nuclease attack in comparison to bulk chromatin. Although ribosomal chromatin is fragmented in a typical nucleosomal pattern, a considerable portion of ribosomal DNA retains a high molecular weight even after extensive digestion. A greater accessibility of the coding region in comparison to the non-coding spacer was found. In embryos, when ribosomal DNA is fully transcribed, these genes are even more highly protected than in adult tissues: in fact, the nucleosomal ladder can hardly be detected and rDNA is preserved in high molecular weight. Treatment of chromatin with 0.8 M NaCl abolishes the specific resistance of the ribosomal chromatin to digestion. The ribosomal chromatin, particularly in its active state, seems to be therefore tightly complexed with chromosomal proteins which protect its DNA from nuclease degradation.

摘要

微球菌核酸酶消化被用作一种工具来研究非洲爪蟾肝脏、血液和胚胎细胞中核糖体染色质的组织情况。研究发现,在肝脏和血细胞中,与整体染色质相比,核糖体DNA能有效抵御核酸酶的攻击。尽管核糖体染色质以典型的核小体模式断裂,但即使经过长时间消化,相当一部分核糖体DNA仍保留高分子量。与非编码间隔区相比,编码区的可及性更高。在胚胎中,当核糖体DNA完全转录时,这些基因比成年组织中受到的保护更高:事实上,几乎检测不到核小体梯带,核糖体DNA以高分子量形式保存。用0.8M NaCl处理染色质会消除核糖体染色质对消化的特异性抗性。因此,核糖体染色质,特别是处于活跃状态时,似乎与染色体蛋白紧密结合,从而保护其DNA免受核酸酶降解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a811/318699/9ee7a394b78a/nar00324-0118-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a811/318699/a7fab3ee088c/nar00324-0112-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a811/318699/c49eb6c01fd3/nar00324-0114-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a811/318699/325d3b7408a1/nar00324-0115-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a811/318699/9f94a6b8e6bf/nar00324-0117-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a811/318699/9ee7a394b78a/nar00324-0118-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a811/318699/a7fab3ee088c/nar00324-0112-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a811/318699/c49eb6c01fd3/nar00324-0114-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a811/318699/325d3b7408a1/nar00324-0115-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a811/318699/9f94a6b8e6bf/nar00324-0117-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a811/318699/9ee7a394b78a/nar00324-0118-a.jpg

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The DNA supercoiling architecture induced by the transcription factor xUBF requires three of its five HMG-boxes.

本文引用的文献

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Structural organization of spacer chromatin between transcribed ribosomal RNA genes in amphibian oocytes.两栖类卵母细胞中转录的核糖体RNA基因之间间隔染色质的结构组织
Eur J Cell Biol. 1980 Dec;23(1):189-96.
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Structure of the active nucleolar chromatin of Xenopus laevis Oocytes.非洲爪蟾卵母细胞活性核仁染色质的结构
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A mosaicism in the higher order structure of Xenopus oocyte nucleolar chromatin prior to and during ribosomal gene transcription.非洲爪蟾卵母细胞核仁染色质在核糖体基因转录之前及转录期间的高阶结构中的镶嵌性。
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Methidiumpropyl-EDTA-iron(II) cleavage of ribosomal DNA chromatin from Dictyostelium discoideum.盘基网柄菌核糖体DNA染色质的甲磺酰丙基-乙二胺四乙酸-铁(II)切割
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The enhancers and promoters of the Xenopus laevis ribosomal spacer are associated with histones upon active transcription of the ribosomal genes.非洲爪蟾核糖体间隔区的增强子和启动子在核糖体基因活跃转录时与组蛋白相关联。
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DNase I sensitivity of ribosomal genes in isolated nucleosome core particles.核糖体基因在分离的核小体核心颗粒中的脱氧核糖核酸酶I敏感性
Nucleic Acids Res. 1980 Jan 11;8(1):197-214. doi: 10.1093/nar/8.1.197-e.
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Disruption of the typical chromatin structure in a 2500 base-pair region at the 5' end of the actively transcribed ovalbumin gene.在活跃转录的卵清蛋白基因5'端一个2500个碱基对区域内典型染色质结构的破坏。
EMBO J. 1982;1(2):223-30. doi: 10.1002/j.1460-2075.1982.tb01151.x.
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Protection of expressed immunoglobulin genes against nuclease cleavage.保护表达的免疫球蛋白基因免受核酸酶切割。
Nucleic Acids Res. 1983 Jun 11;11(11):3593-612. doi: 10.1093/nar/11.11.3593.
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Chromatin structure along the ribosomal DNA of Dictyostelium. Regional differences and changes accompanying cell differentiation.盘基网柄菌核糖体DNA上的染色质结构。区域差异及伴随细胞分化的变化。
J Mol Biol. 1983 May 25;166(3):361-81. doi: 10.1016/s0022-2836(83)80090-4.
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Chromatin structure of histone genes in sea urchin sperms and embryos.海胆精子和胚胎中组蛋白基因的染色质结构。
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Chromatin.染色质
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