Asakura S, Honda H
J Mol Biol. 1984 Jul 5;176(3):349-67. doi: 10.1016/0022-2836(84)90494-7.
To help understand the bacterial chemotactic response of excitation and adaptation, we propose a simple two-state model for receptor proteins (methyl-accepting chemotaxis proteins), in the light of evidence that they undergo multiple methylation in a preferred order. The model includes the following assumptions. (1) The receptor protein is in rapid equilibrium between two conformations, S and T, and the equilibrium shifts towards the T form as the number of methyl groups increases. (2) Attractants bind to the S form of the receptor, repellents bind to the T form, and both classes of ligand shift the S/T equilibrium according to the mass-action law. (3) The S form of the receptor accepts methyl groups one by one in a definite order, while the T form releases the methyl groups in the reverse order. Methylation and demethylation are slow reactions, and changes in the total number of methyl groups lag behind shifts in the S/T equilibrium. (4) The pattern of bacterial swimming at any moment is determined by the partition of the receptor between the two conformations, with tumbling frequency being a monotonically increasing function of the total T fraction of the receptor. This model shows that, if the receptor satisfies two sets of relationships imposed on its equilibrium and kinetic constants, it can maintain the steady-state total T fraction essentially constant over a broad range of ligand concentration, enabling cells to adapt to large changes in chemical environment. A stepwise change in ligand concentration leads to a rapid change in the total T fraction (excitation), followed by a slow relaxation process (adaptation). Computer simulations have been made of the whole response process, employing a receptor with six methylation sites per molecule and assuming simple sets of parameters. The results are in general agreement with published data on receptor methylation, as well as with a variety of observations of bacterial chemoresponse. Multiple methylation of the receptor proves to be necessary for the cells to respond sensitively to environmental changes.
为了帮助理解细菌的兴奋和适应趋化反应,鉴于受体蛋白(甲基接受趋化蛋白)按优先顺序进行多次甲基化的证据,我们提出了一个简单的双态模型。该模型包括以下假设。(1)受体蛋白在两种构象S和T之间快速平衡,随着甲基基团数量的增加,平衡向T形式移动。(2)吸引剂与受体的S形式结合,排斥剂与T形式结合,两类配体都根据质量作用定律改变S/T平衡。(3)受体的S形式按确定顺序逐个接受甲基基团,而T形式以相反顺序释放甲基基团。甲基化和去甲基化是缓慢反应,甲基基团总数的变化滞后于S/T平衡的移动。(4)细菌在任何时刻的游动模式由受体在两种构象之间的分配决定,翻滚频率是受体总T分数的单调递增函数。该模型表明,如果受体满足对其平衡和动力学常数施加的两组关系,它可以在广泛的配体浓度范围内保持稳态总T分数基本恒定,使细胞能够适应化学环境的大变化。配体浓度的逐步变化导致总T分数的快速变化(兴奋),随后是缓慢的弛豫过程(适应)。我们对整个反应过程进行了计算机模拟,使用每个分子有六个甲基化位点的受体并假设了简单的参数集。结果与关于受体甲基化的已发表数据以及细菌化学响应的各种观察结果总体一致。事实证明,受体的多次甲基化对于细胞对环境变化做出敏感反应是必要的。