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从纤细裸藻中纯化胆色素原脱氨酶及其动力学研究。

Purification of porphobilinogen deaminase from Euglena gracilis and studies of its kinetics.

作者信息

Williams D C, Morgan G S, McDonald E, Battersby A R

出版信息

Biochem J. 1981 Jan 1;193(1):301-10. doi: 10.1042/bj1930301.

DOI:10.1042/bj1930301
PMID:6796041
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1162603/
Abstract
  1. Porphobilinogen deaminase [porphobilinogen ammonia-lyase (polymerizing), EC 4.3.1.8] from Euglena gracilis was purified more than 200-fold. 2. The enzyme has a molecular weight of 41 000 +/- 2000, does not contain a chromophoric prosthetic group, and appears not to require metal ions for activity. 3. The stoicheiometry of the overall reaction at pH 7.4 was shown to be: 4 Porphobilinogen leads to uroporphyrinogen-I + 4 NH4+. This stoicheiometry for porphobilinogen and uroporphyrinogen was also observed over a wide range of pH values. 4. Initial-velocity studies showed a hyperbolic dependence of velocity on substrate concentration, demonstrating the existence of a displacement-type mechanism. 5. Vmax. varied with pH as a typical bell-shaped curve, indicating that two ionizable groups with pK values of 6.1 and 8.9 are important for catalysis. A plot of Vmax./Km against pH showed a single ionization (pK 8.2) to influence binding of substrate.
摘要
  1. 从纤细裸藻中纯化得到的胆色素原脱氨酶[胆色素原氨裂解酶(聚合),EC 4.3.1.8],纯化倍数超过200倍。2. 该酶的分子量为41 000±2000,不含有发色辅基,且似乎不需要金属离子来发挥活性。3. 在pH 7.4时,整个反应的化学计量关系表明为:4个胆色素原生成尿卟啉原-I + 4个NH₄⁺。在很宽的pH值范围内也观察到了胆色素原和尿卟啉原的这种化学计量关系。4. 初速度研究表明速度对底物浓度呈双曲线依赖关系,证明存在置换型机制。5. Vmax随pH呈典型的钟形曲线变化,表明两个pK值分别为6.1和8.9的可电离基团对催化作用很重要。Vmax/Km对pH作图显示单个电离(pK 8.2)影响底物结合。
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7f2c/1162603/2d69b5ad3374/biochemj00408-0295-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7f2c/1162603/2d69b5ad3374/biochemj00408-0295-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7f2c/1162603/2d69b5ad3374/biochemj00408-0295-a.jpg

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本文引用的文献

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Spectral-absorption coefficients of some porphyrins in the Soret-band region.某些卟啉在索雷特带区域的光谱吸收系数。
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Purification and properties of porphobilinogen deaminase from Arabidopsis thaliana.拟南芥胆色素原脱氨酶的纯化及性质
Biochem J. 1994 May 1;299 ( Pt 3)(Pt 3):895-902. doi: 10.1042/bj2990895.
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Porphobilinogen deaminase and uroporphyrinogen III synthase: structure, molecular biology, and mechanism.胆色素原脱氨酶和尿卟啉原III合酶:结构、分子生物学及作用机制
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Structure and expression of chloroplast-localized porphobilinogen deaminase from pea (Pisum sativum L.) isolated by redundant polymerase chain reaction.通过冗余聚合酶链反应分离得到的豌豆(Pisum sativum L.)叶绿体定位胆色素原脱氨酶的结构与表达
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Characterization of the multiple forms of hydroxymethylbilane synthase from rat spleen.大鼠脾脏中羟甲基胆色素原合酶多种形式的表征
Biochem J. 1984 Feb 1;217(3):675-83. doi: 10.1042/bj2170675.
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Modification of hydroxymethylbilane synthase (porphobilinogen deaminase) by pyridoxal 5'-phosphate. Demonstration of an essential lysine residue.5'-磷酸吡哆醛对羟甲基胆色素原合酶(胆色素原脱氨酶)的修饰。一个必需赖氨酸残基的证明。
Biochem J. 1984 Aug 15;222(1):93-102. doi: 10.1042/bj2220093.
9
Purification and properties of uroporphyrinogen III synthase (co-synthetase) from Euglena gracilis.纤细裸藻中尿卟啉原III合酶(协同合成酶)的纯化及性质
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Purification, N-terminal amino acid sequence and properties of hydroxymethylbilane synthase (porphobilinogen deaminase) from Escherichia coli.来自大肠杆菌的羟甲基胆色素原合酶(胆色素原脱氨酶)的纯化、N端氨基酸序列及性质
Biochem J. 1986 Nov 15;240(1):273-6. doi: 10.1042/bj2400273.
Science. 1955 Jun 17;121(3155):878-9. doi: 10.1126/science.121.3155.878.
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DISC ELECTROPHORESIS. II. METHOD AND APPLICATION TO HUMAN SERUM PROTEINS.圆盘电泳。II. 方法及其在人血清蛋白中的应用。
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The enzymatic synthesis of porphyrins from porphobilinogen. II. Uroporphyrin III.由胆色素原进行卟啉的酶促合成。II. 尿卟啉III
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The enzymatic synthesis of porphyrins from porphobilinogen. I. Uroporphyrin I.由胆色素原进行卟啉的酶促合成。I.尿卟啉I
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Purification and properties of uroporphyrinogen I synthase from human erythrocytes. Identification of stable enzyme-substrate intermediates.人红细胞尿卟啉原I合酶的纯化及性质。稳定酶-底物中间体的鉴定。
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Porphyrin biosynthesis. VI. Separation and purification of porphobilinogen deaminase and uroporphyrinogen isomerase from cow liver. Porphobilinogenase an allosteric enzyme.卟啉生物合成。VI. 从牛肝中分离和纯化胆色素原脱氨酶和尿卟啉原异构酶。胆色素原酶是一种别构酶。
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