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大肠杆菌延伸因子Tu四方晶型的生化与结构研究。

Biochemical and structural studies of the tetragonal crystalline modification of the Escherichia coli elongation factor Tu.

作者信息

Jurnak F, McPherson A, Wang A H, Rich A

出版信息

J Biol Chem. 1980 Jul 25;255(14):6751-7.

PMID:6993478
Abstract

The tetragonal crystalline form of the trypsin-treated Escherichia coli protein elongation factor Tu has been analyzed by biochemical and x-ray crystallographic techniques. The crystals contain two tightly associated polypeptide fragments of molecular weight 36,000 and 6,500 which represent 97% of the native enzyme. The crystals do not contain a short internal polypeptide fragment of 14 amino acids which dissociates from the native enzyme following mild trypsin digestion. The short fragment has been implicated in the aminoacyl-tRNA binding function and its location has been determined. The structure of the modified enzyme in the P4(3)2(1)2 crystal form has been determined to 5 A resolution by x-ray diffraction methods. The protein consists of two domains: the larger domain exhibits considerable alpha helical characteristics and the smaller domain has no identifiable secondary structural features. The relationship between the double domain structure of the enzyme and its biochemical properties is discussed.

摘要

用生物化学和X射线晶体学技术分析了经胰蛋白酶处理的大肠杆菌蛋白质延伸因子Tu的四方晶体形式。晶体包含两个紧密结合的多肽片段,分子量分别为36,000和6,500,占天然酶的97%。晶体中不包含一个14个氨基酸的短内部多肽片段,该片段在温和的胰蛋白酶消化后会从天然酶上解离。该短片段与氨酰-tRNA结合功能有关,其位置已确定。通过X射线衍射方法,已将P4(3)2(1)2晶体形式的修饰酶结构解析到5埃分辨率。该蛋白质由两个结构域组成:较大的结构域具有相当多的α螺旋特征,较小的结构域没有可识别的二级结构特征。讨论了该酶的双结构域结构与其生化性质之间的关系。

相似文献

1
Biochemical and structural studies of the tetragonal crystalline modification of the Escherichia coli elongation factor Tu.大肠杆菌延伸因子Tu四方晶型的生化与结构研究。
J Biol Chem. 1980 Jul 25;255(14):6751-7.
2
The amino acid sequence of elongation factor Tu of Escherichia coli. The complete sequence.大肠杆菌延伸因子Tu的氨基酸序列。完整序列。
J Biol Chem. 1981 Aug 10;256(15):8102-9.
3
Structural features of the GDP binding site of elongation factor Tu from Escherichia coli as determined by x-ray diffraction.通过X射线衍射测定的大肠杆菌延伸因子Tu的GDP结合位点的结构特征。
FEBS Lett. 1981 Jun 29;129(1):177-9. doi: 10.1016/0014-5793(81)80784-3.
4
A small-angle X-ray scattering study of the complex formation between elongation factor Tu . GTP and valyl-tRNA Val I from Escherichia coli.大肠杆菌中延伸因子Tu·GTP与缬氨酰-tRNA Val I之间复合物形成的小角X射线散射研究。
Eur J Biochem. 1981 Jun;117(1):155-9. doi: 10.1111/j.1432-1033.1981.tb06314.x.
5
Crystals of a large tryptic peptide (fragment A) of elongation factor EF-Tu from Escherichia coli.来自大肠杆菌的延伸因子EF-Tu的一种大型胰蛋白酶肽(片段A)的晶体。
FEBS Lett. 1977 Feb 15;74(1):88-90. doi: 10.1016/0014-5793(77)80759-x.
6
Bulk preparation and crystallization of the Escherichia coli elongation factor Tu-Ts complex.大肠杆菌延伸因子Tu-Ts复合物的大量制备与结晶
Anal Biochem. 1985 Oct;150(1):243-8. doi: 10.1016/0003-2697(85)90466-x.
7
Crystal structure of intact elongation factor EF-Tu from Escherichia coli in GDP conformation at 2.05 A resolution.来自大肠杆菌的完整延伸因子EF-Tu处于GDP构象时2.05埃分辨率的晶体结构。
J Mol Biol. 1999 Jan 22;285(3):1245-56. doi: 10.1006/jmbi.1998.2387.
8
Effects of mutagenesis of Gln97 in the switch II region of Escherichia coli elongation factor Tu on its interaction with guanine nucleotides, elongation factor Ts, and aminoacyl-tRNA.大肠杆菌延伸因子Tu的开关II区域中谷氨酰胺97突变对其与鸟嘌呤核苷酸、延伸因子Ts及氨酰-tRNA相互作用的影响。
Biochemistry. 2003 Nov 25;42(46):13587-95. doi: 10.1021/bi034855a.
9
Crystals of partially trypsin-digested elongation factor Tu.部分经胰蛋白酶消化的延伸因子Tu的晶体。
J Mol Biol. 1976 Oct 5;106(4):943-50. doi: 10.1016/0022-2836(76)90344-2.
10
Conformational differences between complexes of elongation factor Tu studied 19F-NMR spectroscopy.通过19F核磁共振光谱研究延伸因子Tu复合物之间的构象差异。
Eur J Biochem. 1993 Dec 15;218(3):1041-7. doi: 10.1111/j.1432-1033.1993.tb18463.x.

引用本文的文献

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Structure of a novel antibacterial toxin that exploits elongation factor Tu to cleave specific transfer RNAs.一种利用延伸因子Tu切割特定转运RNA的新型抗菌毒素的结构。
Nucleic Acids Res. 2017 Sep 29;45(17):10306-10320. doi: 10.1093/nar/gkx700.
2
Application of Hybrid Functional Groups to Predict ATP Binding Proteins.混合官能团在预测ATP结合蛋白中的应用。
ISRN Comput Biol. 2014 Jan 8;2014:581245. doi: 10.1155/2014/581245.
3
Identifying ligand-binding hot spots in proteins using brominated fragments.利用溴化片段鉴定蛋白质中的配体结合热点。
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Sep;69(Pt 9):1060-5. doi: 10.1107/S1744309113018551. Epub 2013 Aug 19.
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Drug Target Exploitable Structural Features of Adenylyl Cyclase Activity in Schistosoma mansoni.曼氏血吸虫腺苷酸环化酶活性的可利用药物靶点结构特征
Drug Target Insights. 2012;6:41-58. doi: 10.4137/DTI.S10219. Epub 2012 Oct 24.
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In situ proteolysis for protein crystallization and structure determination.用于蛋白质结晶和结构测定的原位蛋白酶解
Nat Methods. 2007 Dec;4(12):1019-21. doi: 10.1038/nmeth1118. Epub 2007 Nov 4.
6
Homologies in the primary structure of GTP-binding proteins: the nucleotide-binding site of EF-Tu and p21.GTP结合蛋白一级结构中的同源性:EF-Tu和p21的核苷酸结合位点
EMBO J. 1984 Feb;3(2):339-41. doi: 10.1002/j.1460-2075.1984.tb01808.x.
7
The influence of different modifications of elongation factor Tu from Escherichia coli on ternary complex formation investigated by fluorescence spectroscopy.通过荧光光谱法研究大肠杆菌延伸因子Tu的不同修饰对三元复合物形成的影响。
Nucleic Acids Res. 1990 Feb 11;18(3):437-41. doi: 10.1093/nar/18.3.437.