Demchenko A P
Ukr Biokhim Zh (1978). 1981 Jul-Aug;53(4):114-28.
The critical analysis of available information on equilibrium intramolecular mobility in proteins is performed and an attempt is made to systematize it in relation to characteristic times tau, probability and spatial scale. We propose to discriminate fast (tau less than 10(-6) s) and slow (tau greater than 10(-6) s) mobility. The methods are considered for investigating fast mobility (X-ray analysis temperature-dependent factor, broadening of absorption spectra, thermal perturbation difference spectra and thermal ring-current shifts of 1H-NMR, fluorescence dipolar relaxation and quenching, 13C-NMR spin-lattice relaxation times and nuclear Overhauser enhancement and others) and the principal results obtained. Fast mobility is widely spread within the molecules. Its existence results in a population of dynamic microstates, the distribution of which depends on local packing density and secondary bonding. The fast movements are local and of very small activation energies. tau depends on the group size and are much longer than those of diffusion in simple liquids. Therefore, this kind of mobility may be characterized as a limited diffusion process in a medium with high and nonuniform viscosity. The significance of the fast mobility for the protein function is discussed. No function significant transglobular change of protein conformation could be obtained by subnanosecond, fast movements, but they depend on the level of "viscosity' of protein interior, produced by fast mobility. The fast dynamic microstates results in distribution of activation parameters for protein reactions.
对蛋白质分子内平衡流动性的现有信息进行了批判性分析,并试图根据特征时间τ、概率和空间尺度对其进行系统化。我们建议区分快速(τ小于10^(-6)秒)和慢速(τ大于10^(-6)秒)流动性。考虑了用于研究快速流动性的方法(X射线分析温度依赖性因子、吸收光谱展宽、热扰动差光谱和1H-NMR的热环电流位移、荧光偶极弛豫和猝灭、13C-NMR自旋晶格弛豫时间和核Overhauser增强等)以及所获得的主要结果。快速流动性在分子内广泛存在。它的存在导致了一系列动态微态,其分布取决于局部堆积密度和二级键合。快速运动是局部的,活化能非常小。τ取决于基团大小,比简单液体中的扩散时间长得多。因此,这种流动性可被表征为在具有高且不均匀粘度的介质中的有限扩散过程。讨论了快速流动性对蛋白质功能的意义。通过亚纳秒级的快速运动无法获得对蛋白质构象有功能意义的跨球状变化,但它们取决于由快速流动性产生的蛋白质内部“粘度”水平。快速动态微态导致蛋白质反应活化参数的分布。