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红细胞增多症理论的当前状况。

The current status of REH theory.

作者信息

Holmquist R, Jukes T H

出版信息

J Mol Evol. 1981;18(1):47-59. doi: 10.1007/BF01733211.

DOI:10.1007/BF01733211
PMID:7334528
Abstract

The recent evaluation by Fitch (1980) of REH theory for macromolecular divergence is a severely erroneous and distorted analysis of our work over the past decade. We reply to those distortions here. At present, there is no factual basis for believing Fitch's assessment that corrections which move evolutionary estimates of total mutations fixed closer to the true distance must do so at the expense of an increased variance sufficient to compromise the value of the improvement. By direct calculation the variance in the estimates of total mutations fixed given by REH theory is comparable to that of other models now in the literature for the case in which genetic events are equiprobable. A general argument is given that suggests that, as we consider more and more carefully the selective, functional, and structural constraints on the evolution of genes and proteins, this variance may be expected to decrease toward a lower bound.

摘要

惠誉(1980年)最近对大分子分歧的相对熵假说(REH)理论的评估,是对我们过去十年工作的严重错误和扭曲的分析。我们在此回应这些歪曲。目前,没有事实依据支持惠誉的评估,即那些使固定总突变的进化估计值更接近真实距离的校正,必然是以增加方差为代价,而这种方差的增加足以损害改进的价值。通过直接计算,在遗传事件等概率的情况下,REH理论给出的固定总突变估计值的方差与文献中其他模型的方差相当。一个一般性的论点表明,随着我们越来越仔细地考虑基因和蛋白质进化中的选择、功能和结构限制,这种方差可能会朝着一个下限减小。

相似文献

1
The current status of REH theory.红细胞增多症理论的当前状况。
J Mol Evol. 1981;18(1):47-59. doi: 10.1007/BF01733211.
2
The old REH theory remains unsatisfactory and the new REH theory is problematical - a reply to Holmquist and Jukes.旧的红细胞生成素调节假说仍不尽人意,新的红细胞生成素调节假说也存在问题——对霍尔姆奎斯特和朱克斯的回应。
J Mol Evol. 1981;18(1):60-7. doi: 10.1007/BF01733212.
3
Evolutionary analysis of alpha and beta hemoglobin genes by REH theory under the assumption of the equiprobability of genetic events.基于遗传事件等概率假设,运用REH理论对α和β血红蛋白基因进行进化分析。
J Mol Evol. 1980 May;15(2):149-59. doi: 10.1007/BF01732667.
4
The estimation of genetic divergence.遗传差异的估计。
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Estimating the total number of nucleotide substitutions since the common ancestor of a pair of homologous genes: comparison of several methods and three beta hemoglobin messenger RNA's.估计一对同源基因的共同祖先以来的核苷酸替换总数:几种方法与三种β-珠蛋白信使核糖核酸的比较
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Nonrandom patterns of codon usage and of nucleotide substitutions in human alpha- and beta-globin genes: an evolutionary strategy reducing the rate of mutations with drastic effects?人类α-和β-珠蛋白基因中密码子使用和核苷酸替换的非随机模式:一种降低具有严重影响的突变率的进化策略?
Proc Natl Acad Sci U S A. 1981 Feb;78(2):1110-4. doi: 10.1073/pnas.78.2.1110.

引用本文的文献

1
The old REH theory remains unsatisfactory and the new REH theory is problematical - a reply to Holmquist and Jukes.旧的红细胞生成素调节假说仍不尽人意,新的红细胞生成素调节假说也存在问题——对霍尔姆奎斯特和朱克斯的回应。
J Mol Evol. 1981;18(1):60-7. doi: 10.1007/BF01733212.
2
Progressive sequence alignment as a prerequisite to correct phylogenetic trees.渐进序列比对是构建正确系统发育树的前提条件。
J Mol Evol. 1987;25(4):351-60. doi: 10.1007/BF02603120.
3
Accumulation pattern of amino acid substitutions in protein evolution.蛋白质进化中氨基酸替换的累积模式。

本文引用的文献

1
Multidimensional scaling, tree-fitting, and clustering.多维标度、树拟合和聚类。
Science. 1980 Oct 24;210(4468):390-8. doi: 10.1126/science.210.4468.390.
2
AMINO-ACID SEQUENCE INVESTIGATIONS OF FIBRINOPEPTIDES FROM VARIOUS MAMMALS: EVOLUTIONARY IMPLICATIONS.不同哺乳动物纤维蛋白肽的氨基酸序列研究:进化意义
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SOME RECENT ADVANCES IN STUDIES OF THE TRANSCRIPTION OF THE GENETIC MESSAGE.遗传信息转录研究的一些最新进展
J Mol Evol. 1987;24(4):357-65. doi: 10.1007/BF02134134.
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A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.一种通过核苷酸序列比较研究来估计碱基替换进化速率的简单方法。
J Mol Evol. 1980 Dec;16(2):111-20. doi: 10.1007/BF01731581.
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Antigenic drift between the haemagglutinin of the Hong Kong influenza strains A/Aichi/2/68 and A/Victoria/3/75.香港流感毒株A/爱知/2/68和A/维多利亚/3/75的血凝素之间的抗原漂移。
Nature. 1980 Aug 21;286(5775):771-6. doi: 10.1038/286771a0.
6
Evolutionary analysis of alpha and beta hemoglobin genes by REH theory under the assumption of the equiprobability of genetic events.基于遗传事件等概率假设,运用REH理论对α和β血红蛋白基因进行进化分析。
J Mol Evol. 1980 May;15(2):149-59. doi: 10.1007/BF01732667.
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Does the information density of amino acid composition increase?
J Mol Evol. 1980 Mar;15(1):73-5. doi: 10.1007/BF01732584.
8
Was globin evolution very rapid in its early stages?: a dubious case against the rate-constancy hypothesis.珠蛋白在其早期阶段的进化非常迅速吗?:一个对速率恒定假说存疑的案例
J Mol Evol. 1981;17(2):110-3. doi: 10.1007/BF01732682.
9
Theoretical foundations for quantitative paleogenetics. Part III: The molecular divergence of nucleic acids and proteins for the case of genetic events of unequal probability.定量古遗传学的理论基础。第三部分:核酸和蛋白质在不等概率遗传事件情况下的分子分歧
J Mol Evol. 1980 Dec;16(3-4):211-67. doi: 10.1007/BF01804977.
10
Estimating the total number of nucleotide substitutions since the common ancestor of a pair of homologous genes: comparison of several methods and three beta hemoglobin messenger RNA's.估计一对同源基因的共同祖先以来的核苷酸替换总数:几种方法与三种β-珠蛋白信使核糖核酸的比较
J Mol Evol. 1980 Dec;16(3-4):153-209. doi: 10.1007/BF01804976.