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用于DNA测序的嘧啶特异性化学反应。

Pyrimidine-specific chemical reactions useful for DNA sequencing.

作者信息

Rubin C M, Schmid C W

出版信息

Nucleic Acids Res. 1980 Oct 24;8(20):4613-9. doi: 10.1093/nar/8.20.4613.

DOI:10.1093/nar/8.20.4613
PMID:7443522
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC324374/
Abstract

Potassium permanganate reacts selectively with thymidine residues in DNA (1) while hydroxylamine hydrochloride at pH 6 specifically attacks cytosine (2). We have adopted these reactions for use with the chemical sequencing method developed by Maxam and Gilbert (3).

摘要

高锰酸钾与DNA中的胸腺嘧啶残基发生选择性反应(1),而pH值为6的盐酸羟胺则特异性地攻击胞嘧啶(2)。我们采用了这些反应来配合Maxam和Gilbert开发的化学测序方法(3)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/72e4/324374/a1fc97e16286/nar00437-0061-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/72e4/324374/a1fc97e16286/nar00437-0061-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/72e4/324374/a1fc97e16286/nar00437-0061-a.jpg

相似文献

1
Pyrimidine-specific chemical reactions useful for DNA sequencing.用于DNA测序的嘧啶特异性化学反应。
Nucleic Acids Res. 1980 Oct 24;8(20):4613-9. doi: 10.1093/nar/8.20.4613.
2
The use of permanganate as a sequencing reagent for identification of 5-methylcytosine residues in DNA.使用高锰酸盐作为测序试剂来鉴定DNA中的5-甲基胞嘧啶残基。
Nucleic Acids Res. 1987 Jul 24;15(14):5517-28. doi: 10.1093/nar/15.14.5517.
3
Detection of single base mismatches of thymine and cytosine residues by potassium permanganate and hydroxylamine in the presence of tetralkylammonium salts.在四烷基铵盐存在下,用高锰酸钾和羟胺检测胸腺嘧啶和胞嘧啶残基的单碱基错配。
Nucleic Acids Res. 1990 Dec 11;18(23):6807-14. doi: 10.1093/nar/18.23.6807.
4
The use of diethyl pyrocarbonate and potassium permanganate as probes for strand separation and structural distortions in DNA.使用焦碳酸二乙酯和高锰酸钾作为DNA链分离及结构畸变的探针。
Methods Mol Biol. 2009;543:73-85. doi: 10.1007/978-1-60327-015-1_6.
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Detection of 5-methylcytosine in DNA sequences.DNA序列中5-甲基胞嘧啶的检测。
Nucleic Acids Res. 1978 May;5(5):1479-85. doi: 10.1093/nar/5.5.1479.
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Hydroxylamine and methoxylamine as probes of DNA structure.羟胺和甲氧基胺作为DNA结构的探针。
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[A simplified variant of the Maxam-Gilbert method for determining the primary structure of oligonucleotides and DNA fragments].[用于确定寡核苷酸和DNA片段一级结构的Maxam-Gilbert方法的简化变体]
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本文引用的文献

1
The selective degradation of pyrimidines in nucleic acids by permanganate oxidation.通过高锰酸盐氧化对核酸中嘧啶进行选择性降解。
Biochem Biophys Res Commun. 1967 Nov 30;29(4):556-61. doi: 10.1016/0006-291x(67)90521-9.
2
Sequencing end-labeled DNA with base-specific chemical cleavages.通过碱基特异性化学切割对末端标记的DNA进行测序。
Methods Enzymol. 1980;65(1):499-560. doi: 10.1016/s0076-6879(80)65059-9.
3
Partial nucleotide sequence of the 300-nucleotide interspersed repeated human DNA sequences.300个核苷酸的散布重复人类DNA序列的部分核苷酸序列。
Eurasian J Med. 2022 Dec;54(Suppl1):47-56. doi: 10.5152/eurasianjmed.2022.22280.
4
Human Mitochondrial Transcription Factor B2 Is Required for Promoter Melting during Initiation of Transcription.人类线粒体转录因子B2是转录起始过程中启动子解链所必需的。
J Biol Chem. 2017 Feb 17;292(7):2637-2645. doi: 10.1074/jbc.M116.751008. Epub 2016 Dec 27.
5
The colorimetric determination of selectively cleaved adenosines and guanosines in DNA oligomers using bicinchoninic acid and copper.使用二辛可宁酸和铜对DNA寡聚物中选择性切割的腺苷和鸟苷进行比色测定。
J Biol Inorg Chem. 2017 Jan;22(1):31-46. doi: 10.1007/s00775-016-1405-4. Epub 2016 Nov 2.
6
Cyclic mismatch binding ligand CMBL4 binds to the 5'-T-3'/5'-GG-3' site by inducing the flipping out of thymine base.环状错配结合配体CMBL4通过诱导胸腺嘧啶碱基翻转与5'-T-3'/5'-GG-3'位点结合。
Nucleic Acids Res. 2016 Sep 6;44(15):7090-9. doi: 10.1093/nar/gkw672. Epub 2016 Jul 27.
7
Structural Insights into the HIV-1 Minus-strand Strong-stop DNA.对HIV-1负链强终止DNA的结构洞察
J Biol Chem. 2016 Feb 12;291(7):3468-82. doi: 10.1074/jbc.M115.708099. Epub 2015 Dec 14.
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On the Mechanism of Gene Silencing in Saccharomyces cerevisiae.酿酒酵母中基因沉默的机制
G3 (Bethesda). 2015 Jun 16;5(8):1751-63. doi: 10.1534/g3.115.018515.
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PLoS One. 2013 May 21;8(5):e65010. doi: 10.1371/journal.pone.0065010. Print 2013.
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Microbiologyopen. 2013 Feb;2(1):75-93. doi: 10.1002/mbo3.58. Epub 2012 Dec 16.
Nature. 1980 Mar 27;284(5754):372-4. doi: 10.1038/284372a0.
4
Base-specific reactions useful for DNA sequencing: methylene blue--sensitized photooxidation of guanine and osmium tetraoxide modification of thymine.用于DNA测序的碱基特异性反应:亚甲蓝敏化的鸟嘌呤光氧化和四氧化锇对胸腺嘧啶的修饰。
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