• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

使用高锰酸盐作为测序试剂来鉴定DNA中的5-甲基胞嘧啶残基。

The use of permanganate as a sequencing reagent for identification of 5-methylcytosine residues in DNA.

作者信息

Fritzsche E, Hayatsu H, Igloi G L, Iida S, Kössel H

出版信息

Nucleic Acids Res. 1987 Jul 24;15(14):5517-28. doi: 10.1093/nar/15.14.5517.

DOI:10.1093/nar/15.14.5517
PMID:3039459
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC306004/
Abstract

The use of permanganate as a reagent for DNA sequencing by chemical degradation has been studied with respect to its specificity for 5-methylcytosine residues. At weakly acidic pH and room temperature, 0.2 mM potassium permanganate reacts preferentially with thymine, 5-methylcytosine, and to a lesser extent with purine residues, while cytosine remains essentially intact. Permanganate oxidation is, therefore, a suitable DNA sequencing reaction for positive discrimination between 5-methylcytosine and unmethylated cytosine.

摘要

关于高锰酸钾作为化学降解法DNA测序试剂对5-甲基胞嘧啶残基的特异性,已进行了研究。在弱酸性pH和室温条件下,0.2 mM高锰酸钾优先与胸腺嘧啶、5-甲基胞嘧啶反应,与嘌呤残基的反应程度较小,而胞嘧啶基本保持完整。因此,高锰酸钾氧化是一种适用于对5-甲基胞嘧啶和未甲基化胞嘧啶进行阳性鉴别的DNA测序反应。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a199/306004/b4ee8128a50c/nar00258-0032-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a199/306004/8a1d2de4e1e4/nar00258-0027-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a199/306004/8a72a182e515/nar00258-0029-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a199/306004/518ff6ad133b/nar00258-0031-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a199/306004/b4ee8128a50c/nar00258-0032-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a199/306004/8a1d2de4e1e4/nar00258-0027-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a199/306004/8a72a182e515/nar00258-0029-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a199/306004/518ff6ad133b/nar00258-0031-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a199/306004/b4ee8128a50c/nar00258-0032-a.jpg

相似文献

1
The use of permanganate as a sequencing reagent for identification of 5-methylcytosine residues in DNA.使用高锰酸盐作为测序试剂来鉴定DNA中的5-甲基胞嘧啶残基。
Nucleic Acids Res. 1987 Jul 24;15(14):5517-28. doi: 10.1093/nar/15.14.5517.
2
Cleavage of methylated CCCGGG sequences containing either N4-methylcytosine or 5-methylcytosine with MspI, HpaII, SmaI, XmaI and Cfr9I restriction endonucleases.使用MspI、HpaII、SmaI、XmaI和Cfr9I限制性内切酶切割含有N4-甲基胞嘧啶或5-甲基胞嘧啶的甲基化CCCGGG序列。
Nucleic Acids Res. 1987 Sep 11;15(17):7091-102. doi: 10.1093/nar/15.17.7091.
3
Pyrimidine-specific chemical reactions useful for DNA sequencing.用于DNA测序的嘧啶特异性化学反应。
Nucleic Acids Res. 1980 Oct 24;8(20):4613-9. doi: 10.1093/nar/8.20.4613.
4
A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands.一种基因组测序方案,可在单条DNA链中对5-甲基胞嘧啶残基进行阳性显示。
Proc Natl Acad Sci U S A. 1992 Mar 1;89(5):1827-31. doi: 10.1073/pnas.89.5.1827.
5
Synthesis of decadeoxyribonucleotides containing N6-methyladenine, N4-methylcytosine, and 5-methylcytosine: recognition and cleavage by restriction endonucleases (nucleosides and nucleotides part 74).含N6-甲基腺嘌呤、N4-甲基胞嘧啶和5-甲基胞嘧啶的脱氧核糖核苷酸的合成:限制性内切酶的识别与切割(核苷与核苷酸第74部分)
Nucleic Acids Res. 1987 Jan 12;15(1):219-32. doi: 10.1093/nar/15.1.219.
6
Presence of 5-methylcytosine in CC(A/T)GG sequences (Dcm methylation) in DNAs from different bacteria.来自不同细菌的DNA中CC(A/T)GG序列(Dcm甲基化)中5-甲基胞嘧啶的存在情况。
J Bacteriol. 1991 Dec;173(23):7692-4. doi: 10.1128/jb.173.23.7692-7694.1991.
7
Sequencing 5-methylcytosine residues in genomic DNA.对基因组DNA中的5-甲基胞嘧啶残基进行测序。
Bioessays. 1994 Jun;16(6):431-6. doi: 10.1002/bies.950160612.
8
5-Methylcytosine in eukaryotic DNA.真核生物DNA中的5-甲基胞嘧啶。
Science. 1981 Jun 19;212(4501):1350-7. doi: 10.1126/science.6262918.
9
Detection of 5-methylcytosine in DNA sequences.DNA序列中5-甲基胞嘧啶的检测。
Nucleic Acids Res. 1978 May;5(5):1479-85. doi: 10.1093/nar/5.5.1479.
10
Mycoplasma restriction: identification of a new type of restriction specificity for DNA containing 5-methylcytosine.支原体限制作用:对含5-甲基胞嘧啶DNA的新型限制特异性的鉴定
J Bacteriol. 1986 Jan;165(1):219-25. doi: 10.1128/jb.165.1.219-225.1986.

引用本文的文献

1
RNA Post-Transcriptional Modifications in Two Large Subunit Intermediates Populated in Cells Expressing Helicase Inactive R331A DbpA.在表达 R331A 无解旋酶活性 DbpA 的 细胞中存在的两个大亚基中间体中,RNA 的转录后修饰。
Biochemistry. 2022 May 17;61(10):833-842. doi: 10.1021/acs.biochem.2c00096. Epub 2022 Apr 28.
2
Chemical display of pyrimidine bases flipped out by modification-dependent restriction endonucleases of MspJI and PvuRts1I families.由MspJI和PvuRts1I家族的修饰依赖性限制内切酶翻转出的嘧啶碱基的化学展示。
PLoS One. 2014 Dec 8;9(12):e114580. doi: 10.1371/journal.pone.0114580. eCollection 2014.
3

本文引用的文献

1
Pyrimidine-specific chemical reactions useful for DNA sequencing.用于DNA测序的嘧啶特异性化学反应。
Nucleic Acids Res. 1980 Oct 24;8(20):4613-9. doi: 10.1093/nar/8.20.4613.
2
The rRNA operon from Zea mays chloroplasts: nucleotide sequence of 23S rDNA and its homology with E.coli 23S rDNA.玉米叶绿体的核糖体RNA操纵子:23S核糖体DNA的核苷酸序列及其与大肠杆菌23S核糖体DNA的同源性。
Nucleic Acids Res. 1981 Jun 25;9(12):2853-69. doi: 10.1093/nar/9.12.2853.
3
Sequencing of the 16S-23S spacer in a ribosomal RNA operon of Zea mays chloroplast DNA reveals two split tRNA genes.
Use of specific chemical reagents for detection of modified nucleotides in RNA.
使用特定化学试剂检测RNA中的修饰核苷酸。
J Nucleic Acids. 2011;2011:408053. doi: 10.4061/2011/408053. Epub 2011 Apr 13.
4
5-methylcytosine in RNA: detection, enzymatic formation and biological functions.RNA 中的 5-甲基胞嘧啶:检测、酶促形成和生物学功能。
Nucleic Acids Res. 2010 Mar;38(5):1415-30. doi: 10.1093/nar/gkp1117. Epub 2009 Dec 8.
5
Identifying 5-methylcytosine and related modifications in DNA genomes.识别DNA基因组中的5-甲基胞嘧啶及相关修饰。
Nucleic Acids Res. 1998 May 15;26(10):2255-64. doi: 10.1093/nar/26.10.2255.
6
The use of 2-hydroperoxytetrahydrofuran as a reagent to sequence cytosine and to probe non-Watson-Crick DNA structures.使用2-氢过氧化四氢呋喃作为试剂对胞嘧啶进行测序并探测非沃森-克里克DNA结构。
Nucleic Acids Res. 1995 Feb 25;23(4):713-9. doi: 10.1093/nar/23.4.713.
7
DNA sequencing of four bases using three lanes.使用三条泳道对四种碱基进行DNA测序。
Nucleic Acids Res. 1992 Mar 25;20(6):1345-8. doi: 10.1093/nar/20.6.1345.
对玉米叶绿体DNA核糖体RNA操纵子中的16S - 23S间隔区进行测序,发现了两个分裂的tRNA基因。
Cell. 1981 Jul;25(1):203-13. doi: 10.1016/0092-8674(81)90245-2.
4
Genomic sequencing.基因组测序
Proc Natl Acad Sci U S A. 1984 Apr;81(7):1991-5. doi: 10.1073/pnas.81.7.1991.
5
Sequencing end-labeled DNA with base-specific chemical cleavages.通过碱基特异性化学切割对末端标记的DNA进行测序。
Methods Enzymol. 1980;65(1):499-560. doi: 10.1016/s0076-6879(80)65059-9.
6
The permanganate oxidation of thymidine and thymidylic acid.胸腺嘧啶核苷和胸苷酸的高锰酸盐氧化反应
Biochim Biophys Acta. 1971 Jan 1;228(1):1-8. doi: 10.1016/0005-2787(71)90541-7.
7
Optimized genomic sequencing as a tool for the study of cytosine methylation in the regulatory region of the chicken vitellogenin II gene.优化的基因组测序作为研究鸡卵黄蛋白原II基因调控区胞嘧啶甲基化的工具。
Gene. 1986;42(2):151-7. doi: 10.1016/0378-1119(86)90291-x.
8
CpG-rich islands and the function of DNA methylation.富含CpG的岛与DNA甲基化的功能。
Nature. 1986;321(6067):209-13. doi: 10.1038/321209a0.
9
Direct chemical method for sequencing RNA.RNA测序的直接化学方法。
Proc Natl Acad Sci U S A. 1979 Apr;76(4):1760-4. doi: 10.1073/pnas.76.4.1760.