• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

来自白喉棒状杆菌的白喉毒素阻遏物的脱辅基形式和金属离子激活形式的结构。

Structures of the apo- and the metal ion-activated forms of the diphtheria tox repressor from Corynebacterium diphtheriae.

作者信息

Schiering N, Tao X, Zeng H, Murphy J R, Petsko G A, Ringe D

机构信息

Department of Chemistry, Brandeis University, Waltham, MA 02154, USA.

出版信息

Proc Natl Acad Sci U S A. 1995 Oct 10;92(21):9843-50. doi: 10.1073/pnas.92.21.9843.

DOI:10.1073/pnas.92.21.9843
PMID:7568230
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC40899/
Abstract

The diphtheria tox repressor (DtxR) of Corynebacterium diphtheriae plays a critical role in the regulation of diphtheria toxin expression and the control of other iron-sensitive genes. The crystal structures of apo-DtxR and of the metal ion-activated form of the repressor have been solved and used to identify motifs involved in DNA and metal ion binding. Residues involved in binding of the activated repressor to the diphtheria tox operator, glutamine 43, arginine 47, and arginine 50, were located and confirmed by site-directed mutagenesis. Previous biochemical and genetic data can be explained in terms of these structures. Conformational differences between apo- and Ni-DtxR are discussed with regard to the mechanism of action of this repressor.

摘要

白喉棒状杆菌的白喉毒素阻遏蛋白(DtxR)在白喉毒素表达调控及其他铁敏感基因的控制中发挥着关键作用。已解析了脱辅基DtxR及金属离子激活形式阻遏蛋白的晶体结构,并用于鉴定参与DNA和金属离子结合的基序。通过定点诱变确定并证实了参与激活阻遏蛋白与白喉毒素操纵基因结合的残基,即谷氨酰胺43、精氨酸47和精氨酸50。先前的生化和遗传学数据可根据这些结构来解释。针对该阻遏蛋白的作用机制,讨论了脱辅基DtxR和镍-DtxR之间的构象差异。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d281/40899/98ca7fe276b7/pnas01499-0429-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d281/40899/8a5ab6852b48/pnas01499-0425-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d281/40899/bcfb2bc0acc5/pnas01499-0427-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d281/40899/408fd4da7ea6/pnas01499-0428-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d281/40899/98ca7fe276b7/pnas01499-0429-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d281/40899/8a5ab6852b48/pnas01499-0425-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d281/40899/bcfb2bc0acc5/pnas01499-0427-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d281/40899/408fd4da7ea6/pnas01499-0428-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d281/40899/98ca7fe276b7/pnas01499-0429-a.jpg

相似文献

1
Structures of the apo- and the metal ion-activated forms of the diphtheria tox repressor from Corynebacterium diphtheriae.来自白喉棒状杆菌的白喉毒素阻遏物的脱辅基形式和金属离子激活形式的结构。
Proc Natl Acad Sci U S A. 1995 Oct 10;92(21):9843-50. doi: 10.1073/pnas.92.21.9843.
2
Structure of the metal-ion-activated diphtheria toxin repressor/tox operator complex.金属离子激活的白喉毒素阻遏物/毒素操纵子复合物的结构
Nature. 1998 Jul 30;394(6692):502-6. doi: 10.1038/28893.
3
Identification of the primary metal ion-activation sites of the diphtheria tox repressor by X-ray crystallography and site-directed mutational analysis.通过X射线晶体学和定点突变分析鉴定白喉毒素阻遏物的主要金属离子激活位点。
Nat Struct Biol. 1996 Apr;3(4):382-7. doi: 10.1038/nsb0496-382.
4
Role of the N-terminal helix in the metal ion-induced activation of the diphtheria toxin repressor DtxR.N端螺旋在金属离子诱导的白喉毒素阻遏物DtxR激活中的作用。
Biochemistry. 2007 Oct 23;46(42):11761-70. doi: 10.1021/bi7007883. Epub 2007 Sep 29.
5
Crystal structure of a cobalt-activated diphtheria toxin repressor-DNA complex reveals a metal-binding SH3-like domain.钴激活的白喉毒素阻遏物 - DNA复合物的晶体结构揭示了一个类似金属结合SH3的结构域。
J Mol Biol. 1999 Sep 24;292(3):653-67. doi: 10.1006/jmbi.1999.3073.
6
The src homology 3-like domain of the diphtheria toxin repressor (DtxR) modulates repressor activation through interaction with the ancillary metal ion-binding site.白喉毒素阻遏物(DtxR)的src同源3样结构域通过与辅助金属离子结合位点相互作用来调节阻遏物的激活。
J Bacteriol. 2003 Apr;185(7):2251-8. doi: 10.1128/JB.185.7.2251-2258.2003.
7
Mechanism of metal ion activation of the diphtheria toxin repressor DtxR.白喉毒素阻遏蛋白DtxR的金属离子激活机制。
Proc Natl Acad Sci U S A. 2005 Dec 20;102(51):18408-13. doi: 10.1073/pnas.0500908102. Epub 2005 Dec 13.
8
Three-dimensional structure of the diphtheria toxin repressor in complex with divalent cation co-repressors.与二价阳离子共阻遏物结合的白喉毒素阻遏物的三维结构。
Structure. 1995 Jan 15;3(1):87-100. doi: 10.1016/s0969-2126(01)00137-x.
9
Methyl groups of thymine bases are important for nucleic acid recognition by DtxR.胸腺嘧啶碱基的甲基基团对于DtxR识别核酸很重要。
Biochemistry. 2000 Aug 29;39(34):10397-407. doi: 10.1021/bi0009284.
10
Transition metal ion activation of DNA binding by the diphtheria tox repressor requires the formation of stable homodimers.白喉毒素阻遏物通过过渡金属离子激活DNA结合需要形成稳定的同二聚体。
Proc Natl Acad Sci U S A. 1995 Jul 18;92(15):6803-7. doi: 10.1073/pnas.92.15.6803.

引用本文的文献

1
The molecular mechanisms of the bacterial iron sensor IdeR.细菌铁传感器 IdeR 的分子机制。
Biochem Soc Trans. 2023 Jun 28;51(3):1319-1329. doi: 10.1042/BST20221539.
2
The pathogenic mechanism of Mycobacterium tuberculosis: implication for new drug development.结核分枝杆菌的致病机制:对新药研发的启示
Mol Biomed. 2022 Dec 22;3(1):48. doi: 10.1186/s43556-022-00106-y.
3
Structural analysis of the manganese transport regulator MntR from Bacillus halodurans in apo and manganese bound forms.巴氏芽孢杆菌锰转运调节蛋白 MntR 原态和锰结合态的结构分析。

本文引用的文献

1
SQUASH - combining constraints for macromolecular phase refinement and extension.SQUASH——用于大分子相位精修与扩展的联合约束条件
Acta Crystallogr D Biol Crystallogr. 1993 Jan 1;49(Pt 1):213-22. doi: 10.1107/S0907444992007911.
2
Role of iron in regulation of virulence genes.铁在毒力基因调控中的作用。
Clin Microbiol Rev. 1993 Apr;6(2):137-49. doi: 10.1128/CMR.6.2.137.
3
Analysis of diphtheria toxin repressor-operator interactions and characterization of a mutant repressor with decreased binding activity for divalent metals.
PLoS One. 2019 Nov 18;14(11):e0224689. doi: 10.1371/journal.pone.0224689. eCollection 2019.
4
: Diphtheria Toxin, the Operon, and Its Regulation by Fe2 Activation of apo-DtxR.白喉毒素、操纵子及其通过 Fe2+ 激活脱辅基-DtxR 进行的调控。
Microbiol Spectr. 2019 Jul;7(4). doi: 10.1128/microbiolspec.GPP3-0063-2019.
5
A transcription network of interlocking positive feedback loops maintains intracellular iron balance in archaea.一个由相互连锁的正反馈回路组成的转录网络维持古菌细胞内的铁平衡。
Nucleic Acids Res. 2017 Sep 29;45(17):9990-10001. doi: 10.1093/nar/gkx662.
6
Transcription factor-based biosensors enlightened by the analyte.由分析物启发的基于转录因子的生物传感器。
Front Microbiol. 2015 Jul 1;6:648. doi: 10.3389/fmicb.2015.00648. eCollection 2015.
7
Novel mechanism of gene regulation: the protein Rv1222 of Mycobacterium tuberculosis inhibits transcription by anchoring the RNA polymerase onto DNA.基因调控的新机制:结核分枝杆菌的蛋白质Rv1222通过将RNA聚合酶锚定在DNA上来抑制转录。
Nucleic Acids Res. 2015 Jul 13;43(12):5855-67. doi: 10.1093/nar/gkv516. Epub 2015 May 20.
8
Crystallization and preliminary X-ray diffraction analysis of the metalloregulatory protein DtxR from Thermoplasma acidophilum.嗜热栖热放线菌金属调节蛋白DtxR的结晶及初步X射线衍射分析
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Feb 1;68(Pt 2):172-4. doi: 10.1107/S1744309111051700. Epub 2012 Jan 26.
9
Treponema denticola TroR is a manganese- and iron-dependent transcriptional repressor.齿垢密螺旋体TroR是一种依赖锰和铁的转录阻遏物。
Mol Microbiol. 2008 Oct;70(2):396-409. doi: 10.1111/j.1365-2958.2008.06418.x. Epub 2008 Aug 27.
10
Backbone dynamics in an intramolecular prolylpeptide-SH3 complex from the diphtheria toxin repressor, DtxR.来自白喉毒素阻遏蛋白DtxR的分子内脯氨酰肽-SH3复合物中的主链动力学
J Mol Biol. 2007 Dec 7;374(4):977-92. doi: 10.1016/j.jmb.2007.09.063. Epub 2007 Oct 31.
白喉毒素阻遏物-操纵基因相互作用分析及对二价金属结合活性降低的突变阻遏物的表征
Mol Microbiol. 1993 Jul;9(1):173-81. doi: 10.1111/j.1365-2958.1993.tb01679.x.
4
Cysteine-102 is positioned in the metal binding activation site of the Corynebacterium diphtheriae regulatory element DtxR.
Proc Natl Acad Sci U S A. 1993 Sep 15;90(18):8524-8. doi: 10.1073/pnas.90.18.8524.
5
Transition metals in control of gene expression.过渡金属对基因表达的调控
Science. 1993 Aug 6;261(5122):715-25. doi: 10.1126/science.8342038.
6
Characterization of mutations that inactivate the diphtheria toxin repressor gene (dtxR).使白喉毒素阻遏基因(dtxR)失活的突变的特征分析。
Infect Immun. 1994 May;62(5):1600-8. doi: 10.1128/iai.62.5.1600-1608.1994.
7
Crystallization and preliminary X-ray studies of the diphtheria Tox repressor from Corynebacterium diphtheriae.来自白喉棒状杆菌的白喉毒素阻遏物的结晶及初步X射线研究。
J Mol Biol. 1994 Dec 16;244(5):654-6. doi: 10.1006/jmbi.1994.1760.
8
Crystal structure of LacI member, PurR, bound to DNA: minor groove binding by alpha helices.与DNA结合的LacI成员PurR的晶体结构:α螺旋与小沟结合
Science. 1994 Nov 4;266(5186):763-70. doi: 10.1126/science.7973627.
9
Determination of the minimal essential nucleotide sequence for diphtheria tox repressor binding by in vitro affinity selection.通过体外亲和选择确定白喉毒素阻遏物结合的最小必需核苷酸序列。
Proc Natl Acad Sci U S A. 1994 Sep 27;91(20):9646-50. doi: 10.1073/pnas.91.20.9646.
10
Iron, DtxR, and the regulation of diphtheria toxin expression.铁、DtxR与白喉毒素表达的调控
Mol Microbiol. 1994 Oct;14(2):191-7. doi: 10.1111/j.1365-2958.1994.tb01280.x.