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一个由相互连锁的正反馈回路组成的转录网络维持古菌细胞内的铁平衡。

A transcription network of interlocking positive feedback loops maintains intracellular iron balance in archaea.

作者信息

Martinez-Pastor Mar, Lancaster W Andrew, Tonner Peter D, Adams Michael W W, Schmid Amy K

机构信息

Department of Biology, Duke University, Durham, NC 27708, USA.

Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602, USA.

出版信息

Nucleic Acids Res. 2017 Sep 29;45(17):9990-10001. doi: 10.1093/nar/gkx662.

Abstract

Iron is required for key metabolic processes but is toxic in excess. This circumstance forces organisms across the tree of life to tightly regulate iron homeostasis. In hypersaline lakes dominated by archaeal species, iron levels are extremely low and subject to environmental change; however, mechanisms regulating iron homeostasis in archaea remain unclear. In previous work, we demonstrated that two transcription factors (TFs), Idr1 and Idr2, collaboratively regulate aspects of iron homeostasis in the model species Halobacterium salinarum. Here we show that Idr1 and Idr2 are part of an extended regulatory network of four TFs of the bacterial DtxR family that maintains intracellular iron balance. We demonstrate that each TF directly regulates at least one of the other DtxR TFs at the level of transcription. Dynamical modeling revealed interlocking positive feedback loop architecture, which exhibits bistable or oscillatory network dynamics depending on iron availability. TF knockout mutant phenotypes are consistent with model predictions. Together, our results support that this network regulates iron homeostasis despite variation in extracellular iron levels, consistent with dynamical properties of interlocking feedback architecture in eukaryotes. These results suggest that archaea use bacterial-type TFs in a eukaryotic regulatory network topology to adapt to harsh environments.

摘要

铁是关键代谢过程所必需的,但过量时具有毒性。这种情况迫使生物界的各种生物严格调节铁稳态。在以古菌类物种为主的高盐湖泊中,铁含量极低且受环境变化影响;然而,古菌中铁稳态的调节机制仍不清楚。在之前的工作中,我们证明了两个转录因子(TFs),即Idr1和Idr2,协同调节模式物种盐生盐杆菌中铁稳态的各个方面。在这里,我们表明Idr1和Idr2是维持细胞内铁平衡的细菌DtxR家族四个转录因子的扩展调控网络的一部分。我们证明每个转录因子在转录水平上直接调节至少一个其他DtxR转录因子。动态建模揭示了相互关联的正反馈回路结构,根据铁的可用性,该结构表现出双稳态或振荡网络动态。转录因子敲除突变体表型与模型预测一致。总之,我们的结果支持该网络尽管细胞外铁水平存在变化,但仍能调节铁稳态,这与真核生物中相互关联的反馈结构的动态特性一致。这些结果表明,古菌在真核调控网络拓扑结构中使用细菌型转录因子来适应恶劣环境。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/35c7/5737653/0e09bdec365e/gkx662fig1.jpg

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