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Surf-1和Surf-2基因及其重要的双向启动子元件在小鼠和人类之间是保守的。

The Surf-1 and Surf-2 genes and their essential bidirectional promoter elements are conserved between mouse and human.

作者信息

Lennard A, Gaston K, Fried M

机构信息

Eukaryotic Gene Organisation and Expression Laboratory, Imperial Cancer Research Fund, London, UK.

出版信息

DNA Cell Biol. 1994 Nov;13(11):1117-26. doi: 10.1089/dna.1994.13.1117.

DOI:10.1089/dna.1994.13.1117
PMID:7702754
Abstract

The organization of the Surfeit locus and the juxtaposition of at least five of the Surfeit genes (Surf-1 to -5) are conserved between mouse and human (Williams et al., 1988; Yon et al., 1993). In the mouse, the heterogeneous transcription start sites of the divergent Surf-1 and Surf-2 genes are separated by a maximum of only 73 bp (Williams and Fried, 1986). This region contains a bidirectional promoter composed of three major factor binding sites required for the efficient expression of both the Surf-1 and Surf-2 genes (Lennard and Fried, 1991). Here we report the isolation and characterization of the human Surf-1 and Surf-2 genes and their intergenic region. Although the major Surf-1 and Surf-2 transcription start sites are separated by 97 bp in the human and there are multiple differences in the mouse and human sequence between and around the transcriptional start sites, there is high conservation of the sequence specifying the three major factor binding sites of the bidirectional promoter. The three factor binding sites (HSu1, 2, and 3) present within the human promoter bind nuclear factors, of which the binding of HSu1 and HSu2 are competed by oligonucleotides carrying the corresponding mouse factor binding sites. The HSu3 site binds factors that are similar but apparently not direct homologs of those that bind to the equivalent mouse sequences. Human Surf-1 and Surf-2 cDNAs have been cloned and sequenced. The putative human Surf-1 and Surf-2 proteins are 77% and 69% identical to the corresponding mouse proteins.

摘要

在小鼠和人类之间,Surfeit基因座的组织以及至少五个Surfeit基因(Surf-1至Surf-5)的并置是保守的(Williams等人,1988年;Yon等人,1993年)。在小鼠中,反向排列的Surf-1和Surf-2基因的异质转录起始位点之间最多仅相隔73 bp(Williams和Fried,1986年)。该区域包含一个双向启动子,由Surf-1和Surf-2基因高效表达所需的三个主要因子结合位点组成(Lennard和Fried,1991年)。在此,我们报告了人类Surf-1和Surf-2基因及其基因间区域的分离和特征。尽管人类中主要的Surf-1和Surf-2转录起始位点相隔97 bp,并且在转录起始位点之间及其周围的小鼠和人类序列存在多个差异,但指定双向启动子三个主要因子结合位点的序列具有高度保守性。人类启动子中存在的三个因子结合位点(HSu1、2和3)结合核因子,其中HSu1和HSu2的结合被携带相应小鼠因子结合位点的寡核苷酸竞争。HSu3位点结合的因子与结合等效小鼠序列的因子相似,但显然不是直接同源物。人类Surf-1和Surf-2 cDNA已被克隆和测序。推测的人类Surf-1和Surf-2蛋白与相应的小鼠蛋白分别具有77%和69%的同一性。

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The Surf-1 and Surf-2 genes and their essential bidirectional promoter elements are conserved between mouse and human.Surf-1和Surf-2基因及其重要的双向启动子元件在小鼠和人类之间是保守的。
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引用本文的文献

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Genome-wide analysis of the transcription factor binding preference of human bi-directional promoters and functional annotation of related gene pairs.人类双向启动子转录因子结合偏好的全基因组分析及相关基因对的功能注释
BMC Syst Biol. 2011 May 4;5 Suppl 1(Suppl 1):S2. doi: 10.1186/1752-0509-5-S1-S2.
2
DNA compaction by the higher-order assembly of PRH/Hex homeodomain protein oligomers.PRH/Hex 同源结构域蛋白寡聚物的高级组装导致 DNA 紧缩。
Nucleic Acids Res. 2010 Nov;38(21):7513-25. doi: 10.1093/nar/gkq659. Epub 2010 Jul 31.
3
Systematic analysis of head-to-head gene organization: evolutionary conservation and potential biological relevance.
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PLoS Comput Biol. 2006 Jul 7;2(7):e74. doi: 10.1371/journal.pcbi.0020074. Epub 2006 May 15.
4
Mutations of SURF-1 in Leigh disease associated with cytochrome c oxidase deficiency.与细胞色素c氧化酶缺乏相关的Leigh病中SURF-1的突变。
Am J Hum Genet. 1998 Dec;63(6):1609-21. doi: 10.1086/302150.
5
A functional YY1 binding site is necessary and sufficient to activate Surf-1 promoter activity in response to serum growth factors.一个功能性的YY1结合位点对于响应血清生长因子激活Surf-1启动子活性而言是必要且充分的。
Nucleic Acids Res. 1997 Sep 15;25(18):3705-11. doi: 10.1093/nar/25.18.3705.
6
Tissue-specific processing of the Surf-5 and Surf-4 mRNAs.Surf-5和Surf-4信使核糖核酸的组织特异性加工
Gene Expr. 1996;6(4):209-18.
7
Surfeit locus gene homologs are widely distributed in invertebrate genomes.过饱基因座基因同源物广泛分布于无脊椎动物基因组中。
Mol Cell Biol. 1996 Oct;16(10):5591-6. doi: 10.1128/MCB.16.10.5591.
8
CpG methylation has differential effects on the binding of YY1 and ETS proteins to the bi-directional promoter of the Surf-1 and Surf-2 genes.CpG甲基化对YY1和ETS蛋白与Surf-1和Surf-2基因双向启动子的结合有不同影响。
Nucleic Acids Res. 1995 Mar 25;23(6):901-9. doi: 10.1093/nar/23.6.901.