Slagle S P, Kozack R E, Subramaniam S
Department of Physiology and Biophysics, Beckman Institute, University of Illinois at Urbana-Champaign 61801.
J Biomol Struct Dyn. 1994 Oct;12(2):439-56. doi: 10.1080/07391102.1994.10508750.
A recently developed multigrid-based Newton method for solving the nonlinear Poisson-Boltzmann equation is applied in an investigation of molecular recognition in the system consisting of the monoclonal antibody HyHEL-5 and hen egg lysozyme. The electrostatic free energy of binding is calculated for the wild-type complex and various mutants in which electrostatic interactions between the two proteins are altered. Mutations which neutralize or reverse the charge of any of the residues involved in salt-links in the native system always yield decreased binding affinities. The stability of the complex can be enhanced through the formation of a new salt-bridge obtained by mutating an asparagine residue of the lysozyme to the negatively-charged aspartate. Ionic strength effects are also examined and found to be significant in some cases.
一种最近开发的基于多重网格的牛顿方法被用于求解非线性泊松 - 玻尔兹曼方程,该方法应用于对由单克隆抗体HyHEL - 5和鸡蛋清溶菌酶组成的系统中的分子识别进行研究。计算了野生型复合物以及两种蛋白质之间静电相互作用发生改变的各种突变体的结合静电自由能。在天然系统中,中和或反转参与盐桥的任何残基电荷的突变总是导致结合亲和力降低。通过将溶菌酶的一个天冬酰胺残基突变为带负电荷的天冬氨酸形成新的盐桥,可以增强复合物的稳定性。还研究了离子强度的影响,发现其在某些情况下具有重要意义。