Gibas C J, Subramaniam S, McCammon J A, Braden B C, Poljak R J
Department of Molecular and Integrative Physiology, Center for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA.
Biochemistry. 1997 Dec 16;36(50):15599-614. doi: 10.1021/bi9701989.
Association between proteins often depends on the pH and ionic strength conditions of the medium in which it takes place. This is especially true in complexation involving titratable residues at the complex interface. Continuum electrostatics methods were used to calculate the pH-dependent energetics of association of hen egg lysozyme with two closely related monoclonal antibodies raised against it and the association of these antibodies against an avian species variant. A detailed analysis of the energetic contributions reveals that even though the hallmark of association in the two complexes is the presence of conserved charged-residue interactions, the environment of these interactions significantly influences the titration behavior and concomitantly the energetics. The contributing factors include minor structural rearrangements, buried interfacial area, dielectric environment of the key titratable residues, and geometry of the residue dispositions. Modeled structures of several mutant complexes were also studied so as to further delineate the contribution of individual factors to the titration behavior.
蛋白质之间的相互作用通常取决于其发生所在介质的pH值和离子强度条件。在涉及复合物界面处可滴定残基的络合作用中尤其如此。采用连续介质静电学方法计算了鸡蛋清溶菌酶与两种针对它产生的密切相关单克隆抗体结合时的pH依赖性能量学,以及这些抗体与一种禽类物种变体的结合。对能量贡献的详细分析表明,尽管两种复合物结合的标志是存在保守的带电残基相互作用,但这些相互作用的环境会显著影响滴定行为,并随之影响能量学。促成因素包括微小的结构重排、埋藏的界面面积、关键可滴定残基的介电环境以及残基排列的几何形状。还研究了几种突变复合物的模拟结构,以便进一步阐明各个因素对滴定行为的贡献。