甘薯属中查尔酮合酶基因家族的进化
Evolution of the chalcone synthase gene family in the genus Ipomoea.
作者信息
Durbin M L, Learn G H, Huttley G A, Clegg M T
机构信息
Department of Botany and Plant Sciences, University of California, Riverside 92521-0124, USA.
出版信息
Proc Natl Acad Sci U S A. 1995 Apr 11;92(8):3338-42. doi: 10.1073/pnas.92.8.3338.
Abstract
The evolution of the chalcone synthase [CHS; malonyl-CoA:4-coumaroyl-CoA malonyltransferase (cyclizing), EC 2.3.1.74] multigene family in the genus Ipomoea is explored. Thirteen CHS genes from seven Ipomoea species (family Convolvulaceae) were sequenced--three from genomic clones and the remainder from PCR amplification with primers designed from the 5' flanking region and the end of the 3' coding region of Ipomoea purpurea Roth. Analysis of the data indicates a duplication of CHS that predates the divergence of the Ipomoea species in this study. The Ipomoea CHS genes are among the most rapidly evolving of the CHS genes sequenced to date. The CHS genes in this study are most closely related to the Petunia CHS-B gene, which is also rapidly evolving and highly divergent from the rest of the Petunia CHS sequences.
摘要
本文探究了甘薯属中查尔酮合酶[CHS；丙二酰辅酶A：4-香豆酰辅酶A丙二酰基转移酶（环化），EC 2.3.1.74]多基因家族的进化情况。对来自7种甘薯属植物（旋花科）的13个CHS基因进行了测序——3个来自基因组克隆，其余的通过使用根据甘薯Ipomoea purpurea Roth的5'侧翼区域和3'编码区末端设计的引物进行PCR扩增获得。数据分析表明，CHS的一次复制发生在本研究中甘薯属物种分化之前。甘薯属的CHS基因是迄今为止测序的CHS基因中进化最快的基因之一。本研究中的CHS基因与矮牵牛CHS-B基因关系最为密切，矮牵牛CHS-B基因也在快速进化，并且与矮牵牛其他CHS序列高度不同。
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本文引用的文献
1
Naturally occurring auxin transport regulators.天然存在的生长素运输调节剂。
Science. 1988 Jul 15;241(4863):346-9. doi: 10.1126/science.241.4863.346.
2
In situ localization of light-induced chalcone synthase mRNA, chalcone synthase, and flavonoid end products in epidermal cells of parsley leaves.在欧芹叶片表皮细胞中光诱导的查尔酮合酶 mRNA、查尔酮合酶和类黄酮终产物的原位定位。
Proc Natl Acad Sci U S A. 1988 May;85(9):2989-93. doi: 10.1073/pnas.85.9.2989.
3
Effects of a locus affecting floral pigmentation in Ipomoea purpurea on female fitness components.影响紫牵牛属植物花色的一个基因座对雌性适合度组分的影响。
Genetics. 1993 Aug;134(4):1237-47. doi: 10.1093/genetics/134.4.1237.
4
In Trifolium subterraneum, chalcone synthase is encoded by a multigene family.在地下三叶草中，查尔酮合酶由一个多基因家族编码。
Gene. 1994 Jan 28;138(1-2):79-86. doi: 10.1016/0378-1119(94)90785-4.
5
Evidence that stilbene synthases have developed from chalcone synthases several times in the course of evolution.在进化过程中，芪合酶多次从查尔酮合酶进化而来的证据。
J Mol Evol. 1994 Jun;38(6):610-8. doi: 10.1007/BF00175881.
6
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.一种通过核苷酸序列比较研究来估计碱基替换进化速率的简单方法。
J Mol Evol. 1980 Dec;16(2):111-20. doi: 10.1007/BF01731581.
7
Evolutionary trees from DNA sequences: a maximum likelihood approach.基于DNA序列的进化树：一种最大似然法。
J Mol Evol. 1981;17(6):368-76. doi: 10.1007/BF01734359.
8
Phytoalexins: enzymology and molecular biology.植物抗毒素：酶学与分子生物学
Adv Enzymol Relat Areas Mol Biol. 1983;55:1-136. doi: 10.1002/9780470123010.ch1.
9
A catalogue of splice junction and putative branch point sequences from plant introns.植物内含子的剪接连接和假定分支点序列目录。
Nucleic Acids Res. 1986 Dec 22;14(24):9549-59. doi: 10.1093/nar/14.24.9549.
10
Sequence-dependent gene conversion: can duplicated genes diverge fast enough to escape conversion?序列依赖性基因转换：重复基因能否快速分化以避免被转换？
Genetics. 1987 Nov;117(3):543-57. doi: 10.1093/genetics/117.3.543.
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