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通过荧光原位杂交将负责胱氨酸尿症的基因(rBAT)以及标记物D2S119和D2S177定位到2p16。

Assignment of the gene responsible for cystinuria (rBAT) and of markers D2S119 and D2S177 to 2p16 by fluorescence in situ hybridization.

作者信息

Calonge M J, Nadal M, Calvano S, Testar X, Zelante L, Zorzano A, Estivill X, Gasparini P, Palacín M, Nunes V

机构信息

Departament de Bioquímica i Fisiologia, Facultat de Biologia, Universitat de Barcelona, Spain.

出版信息

Hum Genet. 1995 Jun;95(6):633-6. doi: 10.1007/BF00209478.

DOI:10.1007/BF00209478
PMID:7789946
Abstract

We have established rBAT (named as SLC3A1 in the Genome Data Base) as a gene responsible for cystinuria, a heritable disorder of amino acid transport. The cystinuria locus has been mapped by linkage between microsatellite markers D2S119 and D2S177. Fluorescence in situ hybridization (FISH) either with Alu-polymerase-chain-reaction (PCR)-amplified sequences of a yeast artificial chromosome (YAC) containing the rBAT gene or with rBAT-specific PCR-amplified genomic fragments, and chromosome G-banding have cytogenetically mapped rBAT to 2p16.3. In order to correlate the physical and genetic information on cystinuria, we have performed FISH with combinations of Alu-PCR-amplified sequences from YACs containing rBAT or the D2S119 and D2S177 loci. In all cases, a fused signal is obtained that demonstrates their close physical location; this allows the assignment of rBAT, cystinuria and their linked markers, D2S119 and D2S177, to 2p16.

摘要

我们已确定rBAT(在基因组数据库中命名为SLC3A1)是一种导致胱氨酸尿症的基因,胱氨酸尿症是一种遗传性氨基酸转运障碍疾病。通过微卫星标记D2S119和D2S177之间的连锁分析,已对胱氨酸尿症基因座进行了定位。利用含rBAT基因的酵母人工染色体(YAC)的Alu聚合酶链反应(PCR)扩增序列或rBAT特异性PCR扩增基因组片段进行荧光原位杂交(FISH),并结合染色体G显带技术,已将rBAT细胞遗传学定位到2p16.3。为了将胱氨酸尿症的物理信息和遗传信息关联起来,我们用含rBAT或D2S119和D2S177基因座的YAC的Alu-PCR扩增序列组合进行了FISH。在所有情况下,都获得了融合信号,这表明它们在物理位置上紧密相邻;这使得rBAT、胱氨酸尿症及其连锁标记D2S119和D2S177被定位到2p16。

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本文引用的文献

1
Cloning and chromosomal localization of a human kidney cDNA involved in cystine, dibasic, and neutral amino acid transport.参与胱氨酸、二碱基和中性氨基酸转运的人肾cDNA的克隆及染色体定位
J Clin Invest. 1993 May;91(5):1959-63. doi: 10.1172/JCI116415.
2
Cystinuria caused by mutations in rBAT, a gene involved in the transport of cystine.由rBAT基因突变引起的胱氨酸尿症,rBAT是一种参与胱氨酸转运的基因。
Nat Genet. 1994 Apr;6(4):420-5. doi: 10.1038/ng0494-420.
3
Localization of a gene causing cystinuria to chromosome 2p.导致胱氨酸尿症的一个基因定位于2号染色体短臂。
提示肾胱氨酸转运体最小功能单位为异二聚体的证据及其在胱氨酸尿症中的意义。
Amino Acids. 1996 Jun;11(2):209-24. doi: 10.1007/BF00813861.
4
New insights into cystinuria: 40 new mutations, genotype-phenotype correlation, and digenic inheritance causing partial phenotype.胱氨酸尿症的新见解:40种新突变、基因型-表型相关性以及导致部分表型的双基因遗传
J Med Genet. 2005 Jan;42(1):58-68. doi: 10.1136/jmg.2004.022244.
5
Localization, by linkage analysis, of the cystinuria type III gene to chromosome 19q13.1.通过连锁分析将Ⅲ型胱氨酸尿症基因定位于19号染色体长臂1区3带。
Am J Hum Genet. 1997 Mar;60(3):611-6.
6
Down syndrome: characterisation of a case with partial trisomy of chromosome 21 owing to a paternal balanced translocation (15;21) (q26;q22.1) by FISH.唐氏综合征:通过荧光原位杂交技术(FISH)对因父亲平衡易位(15;21)(q26;q22.1)导致21号染色体部分三体的一例病例的特征分析。
J Med Genet. 1997 Jan;34(1):50-4. doi: 10.1136/jmg.34.1.50.
7
Genetic heterogeneity in cystinuria: the SLC3A1 gene is linked to type I but not to type III cystinuria.胱氨酸尿症的遗传异质性:溶质载体家族3成员1(SLC3A1)基因与Ⅰ型胱氨酸尿症相关,但与Ⅲ型胱氨酸尿症无关。
Proc Natl Acad Sci U S A. 1995 Oct 10;92(21):9667-71. doi: 10.1073/pnas.92.21.9667.
Nat Genet. 1994 Apr;6(4):415-9. doi: 10.1038/ng0494-415.
4
Automated construction of genetic linkage maps using an expert system (MultiMap): a human genome linkage map.使用专家系统(MultiMap)自动构建遗传连锁图谱:人类基因组连锁图谱。
Nat Genet. 1994 Apr;6(4):384-90. doi: 10.1038/ng0494-384.
5
Characterization of the promoter region of the gene for the rat neutral and basic amino acid transporter and chromosomal localization of the human gene.大鼠中性和碱性氨基酸转运蛋白基因启动子区域的特征分析及人类基因的染色体定位
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6
Expression cloning of a human renal cDNA that induces high affinity transport of L-cystine shared with dibasic amino acids in Xenopus oocytes.一种人类肾脏cDNA的表达克隆,该cDNA可诱导非洲爪蟾卵母细胞中与二碱基氨基酸共享的L-胱氨酸的高亲和力转运。
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Delineation of individual human chromosomes in metaphase and interphase cells by in situ suppression hybridization using recombinant DNA libraries.利用重组DNA文库通过原位抑制杂交技术描绘中期和间期细胞中的单个人类染色体。
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Construction and characterization of a yeast artificial chromosome library containing seven haploid human genome equivalents.包含七个单倍体人类基因组当量的酵母人工染色体文库的构建与表征。
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Current methods for YAC clone characterization.
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