Scott W G, Stoddard B L
MRC Laboratory of Molecular Biology, Cambridge, UK.
Structure. 1994 Sep 15;2(9):877-87. doi: 10.1016/s0969-2126(94)00088-3.
The aspartate receptor is a transmembrane protein that mediates bacterial chemotaxis. The structures of the periplasmic ligand-binding domain reveal a dimer, each subunit with four alpha-helix bundles, with aspartate binding to one of two sites at the subunit interface. The transmembrane regions of the receptor were not included in these structures.
To investigate the structure of the transmembrane region, we have made a mutant protein with two cross-links, restraining the subunit-subunit interface on both sides of the membrane, and have made an energy-minimized model of the transmembrane region. We demonstrate that the transmembrane helices form a coiled coil which extends from the periplasmic subunit through the membrane. We have constructed a model of the ligand-binding domains with the amino-terminal transmembrane helices.
We draw three conclusions from our model. Firstly, the interface between receptor subunits in the intact receptor consists of an uninterrupted coiled coil. Secondly, this structure rules out several postulated mechanisms of signalling. Thirdly, side chain packing constraints within the helices dictate that local structural changes must be small, but are propagated over a long distance rather than being dissipated locally. Low energy changes in the conformation of side chains are a probable mechanism of signal transduction in the aspartate receptor.
天冬氨酸受体是一种介导细菌趋化作用的跨膜蛋白。周质配体结合结构域的结构显示为二聚体,每个亚基有四个α-螺旋束,天冬氨酸结合在亚基界面的两个位点之一。这些结构中未包含受体的跨膜区域。
为了研究跨膜区域的结构,我们制备了一种带有两个交联的突变蛋白,限制膜两侧的亚基-亚基界面,并构建了跨膜区域的能量最小化模型。我们证明跨膜螺旋形成一个卷曲螺旋,从周质亚基延伸穿过膜。我们构建了带有氨基末端跨膜螺旋的配体结合结构域模型。
我们从模型中得出三个结论。首先,完整受体中受体亚基之间的界面由一个不间断的卷曲螺旋组成。其次,这种结构排除了几种假定的信号传导机制。第三,螺旋内的侧链堆积限制表明局部结构变化必须很小,但会在长距离上传播而不是在局部消散。侧链构象的低能量变化可能是天冬氨酸受体信号转导的机制。