• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

拟南芥和甘蓝染色体的比较图谱揭示了保守组织岛。

Comparative mapping of Arabidopsis thaliana and Brassica oleracea chromosomes reveals islands of conserved organization.

作者信息

Kowalski S P, Lan T H, Feldmann K A, Paterson A H

机构信息

Department of Soil and Crop Sciences, Texas A&M University, College Station 77843-2474.

出版信息

Genetics. 1994 Oct;138(2):499-510. doi: 10.1093/genetics/138.2.499.

DOI:10.1093/genetics/138.2.499
PMID:7828831
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1206166/
Abstract

The chromosomes of Arabidopsis thaliana and Brassica oleracea have been extensively rearranged since the divergence of these species; however, conserved regions are evident. Eleven regions of conserved organization were detected, ranging from 3.7 to 49.6 cM in A. thaliana, spanning 158.2 cM (24.6%) of the A. thaliana genome, and 245 cM (29.9%) of the B. oleracea genome. At least 17 translocations and 9 inversions distinguish the genomes of A. thaliana and B. oleracea. In one case B. oleracea homoeologs show a common marker order, which is distinguished from the A. thaliana order by a rearrangement, indicating that the lineages of A. thaliana and B. oleracea diverged prior to chromosomal duplication in the Brassica lineage (for at least this chromosome). Some chromosomal segments in B. oleracea appear to be triplicated, indicating the need for reevaluation of a classical model for Brassica chromosome evolution by duplication. The distribution of duplicated loci mapped for about 13% of the DNA probes studied in A. thaliana suggests that ancient duplications may also have occurred in Arabidopsis. The degree of chromosomal divergence between A. thaliana and B. oleracea appears greater than that found in other confamilial species for which comparative maps are available.

摘要

自拟南芥和甘蓝分化以来,它们的染色体发生了广泛的重排;然而,保守区域依然明显。共检测到11个保守组织区域,在拟南芥中长度为3.7至49.6厘摩,跨越拟南芥基因组的158.2厘摩(24.6%)以及甘蓝基因组的245厘摩(29.9%)。至少17次易位和9次倒位区分了拟南芥和甘蓝的基因组。在一个案例中,甘蓝的同源基因显示出一种共同的标记顺序,该顺序与拟南芥的顺序因一次重排而不同,这表明拟南芥和甘蓝的谱系在芸苔属谱系的染色体加倍之前就已经分化(至少对于这条染色体而言)。甘蓝中的一些染色体片段似乎是三倍体,这表明需要重新评估关于芸苔属染色体通过加倍进化的经典模型。在拟南芥中,为约13%的所研究DNA探针定位的重复基因座分布表明,拟南芥中可能也发生过古老的重复事件。拟南芥和甘蓝之间的染色体分化程度似乎大于其他有比较图谱的同科物种。

相似文献

1
Comparative mapping of Arabidopsis thaliana and Brassica oleracea chromosomes reveals islands of conserved organization.拟南芥和甘蓝染色体的比较图谱揭示了保守组织岛。
Genetics. 1994 Oct;138(2):499-510. doi: 10.1093/genetics/138.2.499.
2
Chromosomal mapping of Brassica oleracea based on ESTs from Arabidopsis thaliana: complexity of the comparative map.基于拟南芥 ESTs 的甘蓝染色体图谱构建:比较图谱的复杂性
Mol Genet Genomics. 2003 Feb;268(5):656-65. doi: 10.1007/s00438-002-0782-2. Epub 2003 Jan 15.
3
Contrasting genome organisation: two regions of the Brassica oleracea genome compared with collinear regions of the Arabidopsis thaliana genome.对比基因组组织:甘蓝基因组的两个区域与拟南芥基因组的共线区域比较。
Genome. 2001 Oct;44(5):808-17.
4
An EST-enriched comparative map of Brassica oleracea and Arabidopsis thaliana.甘蓝和拟南芥的一个富含EST的比较图谱。
Genome Res. 2000 Jun;10(6):776-88. doi: 10.1101/gr.10.6.776.
5
Gene for gene alignment between the Brassica and Arabidopsis genomes by direct transcriptome mapping.通过直接转录组图谱绘制实现甘蓝型油菜与拟南芥基因组间的基因对基因比对。
Theor Appl Genet. 2003 Jun;107(1):168-80. doi: 10.1007/s00122-003-1236-x. Epub 2003 Mar 21.
6
Comparative analysis of the Brassica oleracea genetic map and the Arabidopsis thaliana genome.甘蓝型油菜遗传图谱与拟南芥基因组的比较分析。
Genome. 2009 Jul;52(7):620-33. doi: 10.1139/G09-035.
7
Genome evolution in Arabidopsis/Brassica: conservation and divergence of ancient rearranged segments and their breakpoints.拟南芥/芸苔属植物的基因组进化:古老重排片段及其断点的保守性与分歧
Plant J. 2006 Jul;47(1):63-74. doi: 10.1111/j.1365-313X.2006.02762.x.
8
Functional alleles of the flowering time regulator FRIGIDA in the Brassica oleracea genome.甘蓝型油菜基因组中开花时间调控因子 FRIGIDA 的功能等位基因。
BMC Plant Biol. 2012 Feb 14;12:21. doi: 10.1186/1471-2229-12-21.
9
Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy.甘蓝和拟南芥的比较基因组学揭示了多倍体化后的基因丢失、片段化和分散情况。
Plant Cell. 2006 Jun;18(6):1348-59. doi: 10.1105/tpc.106.041665. Epub 2006 Apr 21.
10
Genome-wide comparative analysis of NBS-encoding genes between Brassica species and Arabidopsis thaliana.甘蓝型油菜与拟南芥 NBS 编码基因的全基因组比较分析。
BMC Genomics. 2014 Jan 3;15(1):3. doi: 10.1186/1471-2164-15-3.

引用本文的文献

1
Genome organization and botanical diversity.基因组组织与植物多样性。
Plant Cell. 2024 May 1;36(5):1186-1204. doi: 10.1093/plcell/koae045.
2
The RNA landscape of in response to short-term salt stress.响应短期盐胁迫的RNA图谱。
Front Plant Sci. 2023 Dec 4;14:1278954. doi: 10.3389/fpls.2023.1278954. eCollection 2023.
3
Evaluating Plant Gene Models Using Machine Learning.使用机器学习评估植物基因模型
Plants (Basel). 2022 Jun 20;11(12):1619. doi: 10.3390/plants11121619.
4
Molecular Breeding Strategy and Challenges Towards Improvement of Downy Mildew Resistance in Cauliflower ( var. L.).花椰菜(变种L.)抗霜霉病改良的分子育种策略与挑战
Front Plant Sci. 2021 Jul 20;12:667757. doi: 10.3389/fpls.2021.667757. eCollection 2021.
5
What has QTL mapping taught us about plant domestication?数量性状基因座定位让我们对植物驯化有了哪些了解?
New Phytol. 2002 Jun;154(3):591-608. doi: 10.1046/j.1469-8137.2002.00420.x.
6
Cleaved amplified polymorphic sequences (CAPS) marker for identification of two mutant alleles of the rapeseed BnaA.FAD2 gene.油菜籽 BnaA.FAD2 基因两个突变等位基因的 CAPS 标记鉴定
Mol Biol Rep. 2020 Oct;47(10):7607-7621. doi: 10.1007/s11033-020-05828-2. Epub 2020 Sep 26.
7
Evolution of MIR159/319 genes in Brassica campestris and their function in pollen development.芸薹属 MIR159/319 基因的进化及其在花粉发育中的功能。
Plant Mol Biol. 2019 Dec;101(6):537-550. doi: 10.1007/s11103-019-00920-z. Epub 2019 Nov 19.
8
Construction of restorer lines and molecular mapping for restorer gene of hau cytoplasmic male sterility in Brassica napus.甘蓝型油菜黄单胞菌雄性不育恢复系的选育及恢复基因的分子标记。
Theor Appl Genet. 2019 Sep;132(9):2525-2539. doi: 10.1007/s00122-019-03368-3. Epub 2019 Jun 4.
9
A chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set.一个染色体水平的序列组装揭示了拟南芥 Nd-1 基因组及其基因集的结构。
PLoS One. 2019 May 21;14(5):e0216233. doi: 10.1371/journal.pone.0216233. eCollection 2019.
10
Transcriptome Analysis of Diurnal Gene Expression in Chinese Cabbage.甘蓝转录组分析昼夜基因表达。
Genes (Basel). 2019 Feb 11;10(2):130. doi: 10.3390/genes10020130.

本文引用的文献

1
Chromosomal variation and evolution.染色体变异与进化。
Science. 1966 Jun 10;152(3728):1463-9. doi: 10.1126/science.152.3728.1463.
2
RFLP Maps Based on a Common Set of Clones Reveal Modes of Chromosomal Evolution in Potato and Tomato.基于一组共同克隆的 RFLP 图谱揭示了马铃薯和番茄的染色体进化模式。
Genetics. 1988 Dec;120(4):1095-103. doi: 10.1093/genetics/120.4.1095.
3
Identification of the genomic locations of duplicate nucleotide sequences in maize by analysis of restriction fragment length polymorphisms.通过分析限制性片段长度多态性鉴定玉米中重复核苷酸序列的基因组位置。
Genetics. 1988 Feb;118(2):353-63. doi: 10.1093/genetics/118.2.353.
4
New World tetraploid cottons contain Old World cytoplasm.新世界四倍体棉含有旧世界细胞质。
Proc Natl Acad Sci U S A. 1989 Jun;86(11):4132-6. doi: 10.1073/pnas.86.11.4132.
5
The significance of responses of the genome to challenge.基因组对挑战做出反应的意义。
Science. 1984 Nov 16;226(4676):792-801. doi: 10.1126/science.15739260.
6
Restriction Fragment Length Polymorphism Linkage Map of Arabidopsis thaliana.拟南芥的限制性片段长度多态性连锁图谱。
Plant Cell. 1989 Jul;1(7):699-705. doi: 10.1105/tpc.1.7.699.
7
Lengths of chromosomal segments conserved since divergence of man and mouse.自人类和小鼠分化以来保守的染色体片段长度。
Proc Natl Acad Sci U S A. 1984 Feb;81(3):814-8. doi: 10.1073/pnas.81.3.814.
8
MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations.MAPMAKER:一个用于构建实验群体和自然群体初级遗传连锁图谱的交互式计算机程序包。
Genomics. 1987 Oct;1(2):174-81. doi: 10.1016/0888-7543(87)90010-3.
9
A copia-like transposable element family in Arabidopsis thaliana.拟南芥中一个类似考皮亚的转座元件家族。
Nature. 1988 Nov 17;336(6196):242-4. doi: 10.1038/336242a0.
10
Maps of linkage and synteny homologies between mouse and man.小鼠与人之间的连锁和同线性同源性图谱。
Trends Genet. 1989 Mar;5(3):82-6. doi: 10.1016/0168-9525(89)90031-0.