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转运RNA 3' 末端腺苷单磷酸的催化作用。

Catalytic roles of the AMP at the 3' end of tRNAs.

作者信息

Wickramasinghe N S, Lacey J C

机构信息

Department of Biochemistry and Molecular Genetics, University of Alabama at Birmingham 35294.

出版信息

Mol Cell Biochem. 1994 Oct 26;139(2):117-21. doi: 10.1007/BF01081734.

DOI:10.1007/BF01081734
PMID:7862102
Abstract

Recent reports suggest that the ribosome retains considerable peptidyl transferase activity even when much of the protein of the ribosome is removed and further suggests that rRNA may be the peptidyl transferase. The work here suggests that the AMP residue at the 3' terminus of each tRNA has some catalytic activity both in the esterification reaction and in forming a pseudopeptide, AcGly, and further suggests that whatever peptidyl transferase is, it finds a cooperative substrate in the aminoacyl-AMP at the 3' terminus of tRNA.

摘要

最近的报告表明,即使核糖体的大部分蛋白质被去除,核糖体仍保留相当大的肽基转移酶活性,并且进一步表明rRNA可能就是肽基转移酶。本文的研究表明,每个tRNA 3'末端的AMP残基在酯化反应以及形成假肽AcGly方面都具有一定的催化活性,并且进一步表明,无论肽基转移酶是什么,它都能在tRNA 3'末端的氨酰-AMP中找到协同底物。

相似文献

1
Catalytic roles of the AMP at the 3' end of tRNAs.转运RNA 3' 末端腺苷单磷酸的催化作用。
Mol Cell Biochem. 1994 Oct 26;139(2):117-21. doi: 10.1007/BF01081734.
2
Ribosome-catalyzed peptide-bond formation with an A-site substrate covalently linked to 23S ribosomal RNA.核糖体催化肽键形成,其中A位点底物与23S核糖体RNA共价连接。
Science. 1998 Apr 10;280(5361):286-9. doi: 10.1126/science.280.5361.286.
3
The ribosome as a versatile catalyst: reactions at the peptidyl transferase center.核糖体作为一种多功能催化剂:在肽基转移酶中心的反应。
Curr Opin Struct Biol. 2013 Aug;23(4):595-602. doi: 10.1016/j.sbi.2013.04.012. Epub 2013 May 24.
4
Changes produced by bound tryptophan in the ribosome peptidyl transferase center in response to TnaC, a nascent leader peptide.结合色氨酸在核糖体肽基转移酶中心响应TnaC(一种新生的前导肽)而产生的变化。
Proc Natl Acad Sci U S A. 2006 Mar 7;103(10):3598-603. doi: 10.1073/pnas.0600082103. Epub 2006 Feb 27.
5
The site of hydrolysis by rabbit reticulocyte peptidyl-tRNA hydrolase is the 3'-AMP terminus of susceptible tRNA substrates.
J Biol Chem. 1992 Jan 25;267(3):2080-6.
6
The peptidyltransferase center of Escherichia coli ribosomes: binding sites for the cytidine 3'-phosphate residues of the aminoacyl-tRNA 3'-terminus and the interrelationships between the acceptor and donor sites.大肠杆菌核糖体的肽基转移酶中心:氨酰-tRNA 3'-末端胞苷3'-磷酸残基的结合位点以及受体和供体位点之间的相互关系。
Biochim Biophys Acta. 1982 Feb 26;696(2):208-11. doi: 10.1016/0167-4781(82)90030-6.
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Induced fit of the peptidyl-transferase center of the ribosome and conformational freedom of the esterified amino acids.核糖体肽基转移酶中心的诱导契合与酯化氨基酸的构象自由度。
RNA. 2017 Feb;23(2):229-239. doi: 10.1261/rna.057273.116. Epub 2016 Nov 22.
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On substrate specificity of the donor site of the Escherichia coli ribosomal peptidyl transferase center. Synthesis of dipeptides from 3'-terminal fragments of aminoacyl-tRNA.关于大肠杆菌核糖体肽基转移酶中心供体部位的底物特异性。由氨酰 - tRNA的3'末端片段合成二肽。
FEBS Lett. 1982 Jun 1;142(1):96-100. doi: 10.1016/0014-5793(82)80227-5.
9
Movement of the 3'-end of tRNA through the peptidyl transferase centre and its inhibition by antibiotics.tRNA 3'端通过肽基转移酶中心的移动及其受抗生素的抑制作用。
FEBS Lett. 1997 Apr 14;406(3):223-33. doi: 10.1016/s0014-5793(97)00261-5.
10
The ribosome can discriminate the chirality of amino acids within its peptidyl-transferase center.核糖体能够在其肽基转移酶中心区分氨基酸的手性。
Proc Natl Acad Sci U S A. 2015 May 12;112(19):6038-43. doi: 10.1073/pnas.1424712112. Epub 2015 Apr 27.

本文引用的文献

1
Cognition, mechanism, and evolutionary relationships in aminoacyl-tRNA synthetases.氨酰-tRNA合成酶的认知、机制及进化关系
Annu Rev Biochem. 1993;62:715-48. doi: 10.1146/annurev.bi.62.070193.003435.
2
The general synthetic route to amino acid esters of nucleotides and nucleoside-5'-triphosphates and some properties of these compounds.核苷酸和核苷 -5'-三磷酸的氨基酸酯的一般合成路线以及这些化合物的一些性质。
Tetrahedron. 1970 Sep;26(18):4419-33. doi: 10.1016/s0040-4020(01)93090-x.
3
Aminoacyl tRNA synthetases: general scheme of structure-function relationships in the polypeptides and recognition of transfer RNAs.
氨酰-tRNA合成酶:多肽中结构-功能关系的一般模式及转运RNA的识别
Annu Rev Biochem. 1987;56:125-58. doi: 10.1146/annurev.bi.56.070187.001013.
4
tRNA identity.转运RNA特异性
Annu Rev Biochem. 1989;58:1029-49. doi: 10.1146/annurev.bi.58.070189.005121.
5
The accuracy of aminoacylation--ensuring the fidelity of the genetic code.氨酰化的准确性——确保遗传密码的忠实性。
Experientia. 1990 Dec 1;46(11-12):1089-96. doi: 10.1007/BF01936918.
6
Chemical esterification of 5'-AMP occurs predominantly at the 2' position.5'-AMP的化学酯化主要发生在2'位。
J Mol Evol. 1990 Oct;31(4):251-6. doi: 10.1007/BF02101120.
7
Aminoacyl-tRNA synthetase family from prokaryotes and eukaryotes: structural domains and their implications.
Prog Nucleic Acid Res Mol Biol. 1991;40:95-142. doi: 10.1016/s0079-6603(08)60840-5.
8
Ribosomal RNA and translation.核糖体RNA与翻译
Annu Rev Biochem. 1991;60:191-227. doi: 10.1146/annurev.bi.60.070191.001203.
9
Recognition of tRNAs by aminoacyl-tRNA synthetases.
Prog Nucleic Acid Res Mol Biol. 1991;41:23-87.
10
Ribonucleic acids may be catalysts for the preferential synthesis of L-amino acid peptides: a minireview.核糖核酸可能是L-氨基酸肽优先合成的催化剂:一篇综述。
J Mol Evol. 1990 Sep;31(3):244-8. doi: 10.1007/BF02109502.