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一种可检测亚洲稻瘿蚊(Orseolia oryzae)基因组中重复DNA元件的DNA序列的特征分析:在生物型DNA指纹识别中的潜在应用

Characterization of a DNA sequence that detects repetitive DNA elements in the Asian rice gall midge (Orseolia oryzae) genome: potential use in DNA fingerprinting of biotypes.

作者信息

Ehtesham N Z, Bentur J S, Bennett J

机构信息

International Centre for Genetic Engineering and Biotechnology, New Delhi, India.

出版信息

Gene. 1995 Feb 14;153(2):179-83. doi: 10.1016/0378-1119(94)00769-o.

DOI:10.1016/0378-1119(94)00769-o
PMID:7875586
Abstract

We have isolated based on reverse genome hybridization, and sequenced a DNA clone, pNZE25, from a partial genomic library of the Asian rice gall midge Orseolia oryzae (Wood-Mason) (O.o.). Clone pNZE25 is highly A+T rich (67%), lacks any open reading frame and does not display homology to sequences in GenBank. Clone pNZE25 detects a 120-bp repeat in the O.o. genome, as seen from the generation of a 120-bp ladder after Southern analysis of HinfI-digested genomic DNA. When used to probe O.o. genomic DNA digested with DraI, HaeIII or AluI, pNZE25 generates individual specific DNA fingerprints on target DNA isolated from gall midge biotypes collected from different parts of India.

摘要

我们基于反向基因组杂交进行了分离,并对来自亚洲稻瘿蚊(Orseolia oryzae (Wood-Mason),简称O.o.)部分基因组文库的一个DNA克隆pNZE25进行了测序。克隆pNZE25富含A+T(67%),缺乏任何开放阅读框,并且与GenBank中的序列没有同源性。从对经HinfI消化的基因组DNA进行Southern分析后产生的120 bp梯状条带可以看出,克隆pNZE25在O.o.基因组中检测到一个120 bp的重复序列。当用pNZE25探测经DraI、HaeIII或AluI消化的O.o.基因组DNA时,它会在从印度不同地区采集的稻瘿蚊生物型分离出的靶DNA上产生各自特异的DNA指纹图谱。

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Characterization of a DNA sequence that detects repetitive DNA elements in the Asian rice gall midge (Orseolia oryzae) genome: potential use in DNA fingerprinting of biotypes.一种可检测亚洲稻瘿蚊(Orseolia oryzae)基因组中重复DNA元件的DNA序列的特征分析:在生物型DNA指纹识别中的潜在应用
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PLoS One. 2015 Jul 30;10(7):e0134625. doi: 10.1371/journal.pone.0134625. eCollection 2015.

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