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大肠杆菌甘氨酸裂解系统控制区的特性分析

Characterization of the gcv control region from Escherichia coli.

作者信息

Stauffer L T, Stauffer G V

机构信息

Department of Microbiology, University of Iowa, Iowa City 52242.

出版信息

J Bacteriol. 1994 Oct;176(20):6159-64. doi: 10.1128/jb.176.20.6159-6164.1994.

DOI:10.1128/jb.176.20.6159-6164.1994
PMID:7928983
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC196953/
Abstract

We constructed a set of deletions upstream of the gcv promoter and analyzed the effects of the deletions on expression of a gcvT-lacZ gene fusion. A deletion that ends at position -313 upstream of the transcription initiation site (+1) results in reduced levels of gcvT-lacZ expression, but the fusion is still inducible by glycine and repressible by purines. A deletion that ends at position -169 results in loss of both GcvA- and Lrp-mediated activation of the gcvT-lacZ fusion. The endpoints of delta -313 and delta -169 also define a site that down-regulates gcvT-lacZ expression two- to threefold. A deletion that ends at position -89 upstream from the transcription initiation site still shows PurR-mediated repression, suggesting that PurR-mediated repression is not by direct interference with the GcvA- and Lrp-mediated regulatory mechanism(s). Gel mobility shift assays and DNase I footprinting showed that Lrp protein binds to multiple sites upstream of the gcv promoter, from about bp -92 to bp -229. The results suggest that the gcv regulatory region is complex, with numerous cis-acting sites that are required for normal gcv expression.

摘要

我们构建了一组位于gcv启动子上游的缺失片段,并分析了这些缺失对gcvT-lacZ基因融合表达的影响。一个在转录起始位点(+1)上游-313位处终止的缺失导致gcvT-lacZ表达水平降低,但其融合体仍可被甘氨酸诱导并被嘌呤抑制。一个在-169位处终止的缺失导致gcvT-lacZ融合体丧失了GcvA和Lrp介导的激活作用。δ-313和δ-169的端点也确定了一个使gcvT-lacZ表达下调两到三倍的位点。一个在转录起始位点上游-89位处终止的缺失仍显示出PurR介导的抑制作用,这表明PurR介导的抑制作用并非通过直接干扰GcvA和Lrp介导的调控机制。凝胶迁移率变动分析和DNase I足迹分析表明,Lrp蛋白结合在gcv启动子上游多个位点,从大约-92 bp到-229 bp。结果表明,gcv调控区域很复杂,具有许多正常gcv表达所需的顺式作用位点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d98/196953/ace250c993c2/jbacter00038-0015-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d98/196953/66e21cc82ea8/jbacter00038-0014-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d98/196953/ace250c993c2/jbacter00038-0015-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d98/196953/66e21cc82ea8/jbacter00038-0014-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d98/196953/ace250c993c2/jbacter00038-0015-a.jpg

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本文引用的文献

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Intermediatry metabolism of Diplococcus glycinophilus. I. Glycine cleavage and one-carbon interconversions.甘氨酸嗜双球菌的中间代谢。I. 甘氨酸裂解和一碳相互转化。
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Lrp, a global regulatory protein of Escherichia coli, binds co-operatively to multiple sites and activates transcription of ilvIH.Lrp是大肠杆菌的一种全局调节蛋白,它协同结合多个位点并激活ilvIH的转录。
大肠杆菌中Lrp调控网络的全基因组规模重建
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Using gene expression data and network topology to detect substantial pathways, clusters and switches during oxygen deprivation of Escherichia coli.利用基因表达数据和网络拓扑结构检测大肠杆菌缺氧过程中的重要通路、簇和开关。
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Crystal structure of the YgfZ protein from Escherichia coli suggests a folate-dependent regulatory role in one-carbon metabolism.来自大肠杆菌的YgfZ蛋白的晶体结构表明其在一碳代谢中具有叶酸依赖性调节作用。
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The cyclic AMP receptor protein is dependent on GcvA for regulation of the gcv operon.环磷酸腺苷受体蛋白对gcv操纵子的调控依赖于GcvA。
J Bacteriol. 1999 Mar;181(6):1912-9. doi: 10.1128/JB.181.6.1912-1919.1999.
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Mutational analysis of the transcriptional regulator GcvA: amino acids important for activation, repression, and DNA binding.转录调节因子GcvA的突变分析:对激活、抑制和DNA结合重要的氨基酸
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Linkage map of Escherichia coli K-12, edition 10: the traditional map.大肠杆菌K-12连锁图谱,第10版:传统图谱。
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Roles of the GcvA and PurR proteins in negative regulation of the Escherichia coli glycine cleavage enzyme system.GcvA和PurR蛋白在大肠杆菌甘氨酸裂解酶系统负调控中的作用。
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DNA Seq. 1993;3(6):339-46. doi: 10.3109/10425179309020835.
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Regulation of the gltBDF operon of Escherichia coli: how is a leucine-insensitive operon regulated by the leucine-responsive regulatory protein?大肠杆菌gltBDF操纵子的调控:亮氨酸不敏感型操纵子是如何被亮氨酸应答调节蛋白调控的?
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Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis.通过聚丙烯酰胺凝胶电泳研究乳糖阻遏物-操纵基因相互作用的平衡与动力学
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