Scott D L, Mandel A M, Sigler P B, Honig B
Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticutt 06511.
Biophys J. 1994 Aug;67(2):493-504. doi: 10.1016/S0006-3495(94)80546-6.
Biochemical and structural data suggest that electrostatic forces play a critical role in the binding of secretory phospholipases A2 to substrate aggregates (micelles, vesicles, monolayers, and membranes). This initial binding (adsorption) of the enzyme to the interface is kinetically distinct from the subsequent binding of substrate to the buried active site. Thus, in the absence of specific active-site interactions, electrostatic forces operating at the molecular surface may orient and hold the enzyme at the interface. We have calculated the electrostatic potentials for 10 species of secretory phospholipases A2 whose atomic coordinates have been determined by x-ray crystallography. Most of these enzymes show a marked electrostatic sidedness that is accentuated to a variable degree by the presence of the essential cofactor calcium ion. This asymmetry suggests a discrete interfacial binding region on the protein's surface, the location of which is in general agreement with proposals derived from the results of chemical modification, mutational, and crystallographic experiments.
生化和结构数据表明,静电力在分泌型磷脂酶A2与底物聚集体(胶束、囊泡、单分子层和膜)的结合中起关键作用。酶与界面的这种初始结合(吸附)在动力学上与底物随后与埋藏的活性位点的结合不同。因此,在没有特定活性位点相互作用的情况下,在分子表面起作用的静电力可能会使酶在界面处定向并保持其位置。我们已经计算了10种分泌型磷脂酶A2的静电势,其原子坐标已通过X射线晶体学确定。这些酶中的大多数都表现出明显的静电偏向性,并且由于必需的辅因子钙离子的存在而在不同程度上得到增强。这种不对称性表明蛋白质表面存在一个离散的界面结合区域,其位置总体上与来自化学修饰、突变和晶体学实验结果的提议一致。