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弗里德赖希共济失调区域:两个新基因的特征分析及关键区域缩小至300千碱基对

The Friedreich ataxia region: characterization of two novel genes and reduction of the critical region to 300 kb.

作者信息

Duclos F, Rodius F, Wrogemann K, Mandel J L, Koenig M

机构信息

Laboratoire de Génétique Moléculaire du CNRS, Unité INSERM 184, Faculté de Médecine et Centre Hospitalier Régional et Universitaire, Strasbourg, France.

出版信息

Hum Mol Genet. 1994 Jun;3(6):909-14. doi: 10.1093/hmg/3.6.909.

DOI:10.1093/hmg/3.6.909
PMID:7951235
Abstract

Friedreich ataxia is a severe neurodegenerative autosomal recessive disorder of unknown biochemical defect. The Friedreich ataxia locus (FRDA) is tightly linked to the centromeric side of the D9S5 locus. We have used 'exon-trapping' to identify two new genes, approximately 100 and 200 kb centromeric to D9S5, respectively. One gene appears ubiquitously expressed while the other is prominently expressed in muscle. The ubiquitous transcript codes for a protein containing a 20 aa repeat reminiscent of simple repeats found in several ribonucleoproteins. Using the single-strand conformation polymorphism (SSCP) procedure, we searched for mutations in affected patients in the coding sequence of the two genes, as well as in a gene that we had previously identified in the same region. Eight polymorphic DNA changes but no causative mutations were found, suggesting that the genes are not candidates for Friedreich ataxia. The discovery of a simple sequence repeat polymorphism in the most centromeric gene allowed the localization within that gene of the breakpoint of a previously described recombination in a Friedreich ataxia family, therefore excluding the two distal genes from the FRDA region. The lack of causative mutations in the three genes and the position of the recombination further delineate the FRDA locus to a 300 kb interval.

摘要

弗里德赖希共济失调是一种严重的神经退行性常染色体隐性疾病,其生化缺陷不明。弗里德赖希共济失调基因座(FRDA)与D9S5基因座着丝粒侧紧密连锁。我们利用“外显子捕获”技术分别在D9S5着丝粒方向约100 kb和200 kb处鉴定出两个新基因。一个基因似乎在各处均有表达,而另一个则在肌肉中显著表达。普遍存在的转录本编码一种含有20个氨基酸重复序列的蛋白质,这让人联想到在几种核糖核蛋白中发现的简单重复序列。我们使用单链构象多态性(SSCP)方法,在受影响患者中搜索这两个基因以及我们先前在同一区域鉴定出的一个基因的编码序列中的突变。结果发现了8个多态性DNA变化,但未发现致病突变,这表明这些基因不是弗里德赖希共济失调的候选基因。在最着丝粒的基因中发现的一个简单序列重复多态性,使得能够在该基因内定位一个弗里德赖希共济失调家族中先前描述的重组断点,从而将FRDA区域内的两个远端基因排除在外。这三个基因中缺乏致病突变以及重组的位置进一步将FRDA基因座限定在一个300 kb的区间内。

相似文献

1
The Friedreich ataxia region: characterization of two novel genes and reduction of the critical region to 300 kb.弗里德赖希共济失调区域:两个新基因的特征分析及关键区域缩小至300千碱基对
Hum Mol Genet. 1994 Jun;3(6):909-14. doi: 10.1093/hmg/3.6.909.
2
Recombinations in individuals homozygous by descent localize the Friedreich ataxia locus in a cloned 450-kb interval.纯合子个体中的重组将弗里德赖希共济失调基因座定位在一个克隆的450千碱基对区间内。
Am J Hum Genet. 1994 Jun;54(6):1050-9.
3
Additional polymorphisms at marker loci D9S5 and D9S15 generate extended haplotypes in linkage disequilibrium with Friedreich ataxia.标记位点D9S5和D9S15处的其他多态性产生了与弗里德赖希共济失调处于连锁不平衡状态的扩展单倍型。
Proc Natl Acad Sci U S A. 1990 Mar;87(5):1796-800. doi: 10.1073/pnas.87.5.1796.
4
A 530kb YAC contig tightly linked to the Friedreich ataxia locus contains five CpG clusters and a new highly polymorphic microsatellite.
Hum Genet. 1992 Jul;89(5):531-8. doi: 10.1007/BF00219179.
5
Friedreich's ataxia: a defect in signal transduction?弗里德赖希共济失调:信号转导缺陷?
Hum Mol Genet. 1995 Aug;4(8):1411-9. doi: 10.1093/hmg/4.8.1411.
6
Genetic recombination events which position the Friedreich ataxia locus proximal to the D9S15/D9S5 linkage group on chromosome 9q.使弗里德赖希共济失调基因座定位于9号染色体长臂上D9S15/D9S5连锁群近端的基因重组事件。
Am J Hum Genet. 1993 Jan;52(1):99-109.
7
Gene in the region of the Friedreich ataxia locus encodes a putative transmembrane protein expressed in the nervous system.弗里德赖希共济失调基因座区域的基因编码一种假定的跨膜蛋白,该蛋白在神经系统中表达。
Proc Natl Acad Sci U S A. 1993 Jan 1;90(1):109-13. doi: 10.1073/pnas.90.1.109.
8
Study of large inbred Friedreich ataxia families reveals a recombination between D9S15 and the disease locus.对大型近亲弗里德赖希共济失调家族的研究揭示了D9S15与疾病基因座之间的重组。
Am J Hum Genet. 1992 Dec;51(6):1372-6.
9
Physical evidence for the position of the Friedreich's ataxia locus FRDA proximal to D9S5.弗里德赖希共济失调基因座FRDA位于D9S5近端的物理证据。
Cytogenet Cell Genet. 1995;71(3):214-6. doi: 10.1159/000134112.
10
Mapping the Friedreich ataxia locus (FRDA) by linkage disequilibrium analysis with highly polymorphic microsatellites.通过与高度多态性微卫星进行连锁不平衡分析来定位弗里德赖希共济失调基因座(FRDA)。
Biomed Pharmacother. 1994;48(5-6):219-24. doi: 10.1016/0753-3322(94)90136-8.

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Proc Natl Acad Sci U S A. 1997 Jul 8;94(14):7452-7. doi: 10.1073/pnas.94.14.7452.
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J Neurol Neurosurg Psychiatry. 1996 Oct;61(4):327-32. doi: 10.1136/jnnp.61.4.327.
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A family segregating a Friedreich ataxia phenotype that is not linked to the FRDA locus.一个分离出与FRDA基因座不连锁的弗里德赖希共济失调表型的家系。
Hum Genet. 1996 Jun;97(6):824-8. doi: 10.1007/BF02346197.
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Comparison of primary structure of a neuron-specific protein, X11, between human and mouse.人类与小鼠之间神经元特异性蛋白X11的一级结构比较。
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The Friedreich ataxia critical region spans a 150-kb interval on chromosome 9q13.弗里德赖希共济失调关键区域位于9号染色体q13上一个150千碱基对的区间内。
Am J Hum Genet. 1995 Nov;57(5):1061-7.